Spa_g00224

Description : component *(uL24c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006569_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g00224
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AT5G54600	No alias	Translation protein SH3-like family protein	0.08	OrthoFinder output from all 47 species
Adi_g019582	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aev_g02979	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ala_g03130	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g04734	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g00183	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0006.g010426	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g02325	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.33G048800.1	Ceric.33G048800	component *(uL24c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000455.16	No alias	No description available	0.01	OrthoFinder output from all 47 species
Cre16.g652550	No alias	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Dac_g00331	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g00516	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g05722	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g22263	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01014572001	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_13209	No alias	50S ribosomal protein L24, chloroplastic OS=Spinacia...	0.05	OrthoFinder output from all 47 species
LOC_Os06g46930.1	LOC_Os06g46930	component psRPL24 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Len_g05147	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Lfl_g05272	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_10018366g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp3g07850.1	No alias	component psRPL24 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Msp_g18519	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Nbi_g00588	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ore_g05626	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g07148	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c15_17530V3.1	Pp3c15_17530	Translation protein SH3-like family protein	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016787	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sam_g08486	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g08487	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Smo230291	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Solyc07g063960.3.1	Solyc07g063960	component psRPL24 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Tin_g02402	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e013043_P001	Zm00001e013043	component psRPL24 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0010206	photosystem II repair	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030091	protein repair	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072488	ammonium transmembrane transport	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003256	Ribosomal_L24	113	176
IPR005824	KOW	80	111

External Links

No external refs found!

Spa_g00224

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation