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  5. AT1G49630

AT1G49630 (ATPREP2, PREP2)


Aliases : ATPREP2, PREP2

Description : presequence protease 2


Gene families : OG0002258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G49630
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Adi_g058434 ATPREP1, PREP1, ATZNMP targeting peptid degrAding peptidase *(PreP) & original... 0.02 OrthoFinder output from all 47 species
Aop_g09951 ATPREP1, PREP1, ATZNMP targeting peptid degrading peptidase *(PreP) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g06505 ATPREP1, PREP1, ATZNMP targeting peptid degrading peptidase *(PreP) & original... 0.02 OrthoFinder output from all 47 species
Len_g11705 ATPREP1, PREP1, ATZNMP targeting peptid degrading peptidase *(PreP) & original... 0.02 OrthoFinder output from all 47 species
MA_10436583g0020 ATPREP2, PREP2 Presequence protease 2, chloroplastic/mitochondrial... 0.03 OrthoFinder output from all 47 species
Nbi_g22480 ATPREP1, PREP1, ATZNMP targeting peptid degrading peptidase *(PreP) & original... 0.03 OrthoFinder output from all 47 species
Ore_g27851 ATPREP1, PREP1, ATZNMP targeting peptid degrading peptidase *(PreP) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g13440 ATPREP1, PREP1, ATZNMP targeting peptid degrading peptidase *(PreP) & original... 0.02 OrthoFinder output from all 47 species
Sam_g24462 No alias targeting peptid degrading peptidase *(PreP) & original... 0.02 OrthoFinder output from all 47 species
Smo152047 ATPREP1, PREP1, ATZNMP Protein modification.peptide... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity ISS Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
BP GO:0006508 proteolysis ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0016485 protein processing IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004825 methionine-tRNA ligase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032365 intracellular lipid transport IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042780 tRNA 3'-end processing IEP HCCA
MF GO:0042781 3'-tRNA processing endoribonuclease activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007863 Peptidase_M16_C 300 487
IPR013578 Peptidase_M16C_assoc 565 814
IPR011765 Pept_M16_N 153 228
No external refs found!