AT1G12800


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG0008626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008626_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G12800

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00260200 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
Adi_g058535 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g12369 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g03977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43677.t2 Aspi01Gene43677 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.34G040000.1 Ceric.34G040000 not classified & original description: pacid=50623148... 0.06 OrthoFinder output from all 47 species
Dac_g13586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09585 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11903 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02856 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01019806001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os02g02390.1 LOC_Os02g02390 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Len_g36057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04234 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp2g11640.1 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016351 No alias delta-12/delta-15 fatty acid desaturase & original... 0.03 OrthoFinder output from all 47 species
Sam_g17254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g007950.3.1 Solyc08g007950 no hits & (original description: none) 0.19 OrthoFinder output from all 47 species
Spa_g12402 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e013455_P001 Zm00001e013455 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
BP GO:0006098 pentose-phosphate shunt RCA Interproscan
BP GO:0006655 phosphatidylglycerol biosynthetic process RCA Interproscan
BP GO:0009073 aromatic amino acid family biosynthetic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009902 chloroplast relocation RCA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0015995 chlorophyll biosynthetic process RCA Interproscan
BP GO:0016117 carotenoid biosynthetic process RCA Interproscan
BP GO:0019252 starch biosynthetic process RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0019344 cysteine biosynthetic process RCA Interproscan
BP GO:0034660 ncRNA metabolic process RCA Interproscan
BP GO:0042793 plastid transcription RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003959 NADPH dehydrogenase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004791 thioredoxin-disulfide reductase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0006109 regulation of carbohydrate metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006424 glutamyl-tRNA aminoacylation IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006636 unsaturated fatty acid biosynthetic process IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009959 negative gravitropism IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
CC GO:0010007 magnesium chelatase complex IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010114 response to red light IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010218 response to far red light IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0010581 regulation of starch biosynthetic process IEP HCCA
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP HCCA
BP GO:0010962 regulation of glucan biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016630 protochlorophyllide reductase activity IEP HCCA
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0017014 protein nitrosylation IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018119 peptidyl-cysteine S-nitrosylation IEP HCCA
BP GO:0018198 peptidyl-cysteine modification IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0019757 glycosinolate metabolic process IEP HCCA
BP GO:0019758 glycosinolate biosynthetic process IEP HCCA
BP GO:0019760 glucosinolate metabolic process IEP HCCA
BP GO:0019761 glucosinolate biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032881 regulation of polysaccharide metabolic process IEP HCCA
BP GO:0032885 regulation of polysaccharide biosynthetic process IEP HCCA
BP GO:0033559 unsaturated fatty acid metabolic process IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042335 cuticle development IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0043157 response to cation stress IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043255 regulation of carbohydrate biosynthetic process IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0047134 protein-disulfide reductase (NAD(P)) activity IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048564 photosystem I assembly IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
MF GO:0051744 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0060359 response to ammonium ion IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:2000904 regulation of starch metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 578 650
IPR028909 L21p-like 508 583
No external refs found!