Spa_g08227

Description : component *(bS20c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006775 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006775_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g08227
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00188920	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
AT3G15190	No alias	chloroplast 30S ribosomal protein S20, putative	0.08	OrthoFinder output from all 47 species
Adi_g045230	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aev_g22835	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ala_g08893	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Aob_g06235	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g03027	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aspi01Gene37724.t1	Aspi01Gene37724	component *(bS20c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0228.g059056	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.11G009600.1	Ceric.11G009600	component *(bS20c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Cre12.g494750	No alias	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from all 47 species
Dac_g10899	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g37258	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Dde_g15842	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g11872	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01014290001	No alias	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Gb_27504	No alias	component psRPS20 of small ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
LOC_Os01g48690.1	LOC_Os01g48690	component psRPS20 of small ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Len_g00203	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Lfl_g00868	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Mp7g14740.1	No alias	component psRPS20 of small ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Nbi_g03416	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g04849	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g10569	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ppi_g26924	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009139	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g20147	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Solyc07g062870.3.1	Solyc07g062870	component psRPS20 of small ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Tin_g10912	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Zm00001e028066_P001	Zm00001e028066	component psRPS20 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
BP	GO:0010206	photosystem II repair	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016730	oxidoreductase activity, acting on iron-sulfur proteins as donors	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0030091	protein repair	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002583	Ribosomal_S20	73	159

External Links

No external refs found!

Spa_g08227

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation