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  5. Zm00001e040640_P002

Zm00001e040640_P002 (Zm00001e040640)


Aliases : Zm00001e040640

Description : eRF3 peptide release factor


Gene families : OG0004213 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004213_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040640_P002
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00137p00107730 evm_27.TU.AmTr_v1... Protein biosynthesis.translation termination.eRF3... 0.02 OrthoFinder output from all 47 species
AT1G18070 No alias Translation elongation factor EF1A/initiation factor... 0.05 OrthoFinder output from all 47 species
Ala_g10914 No alias translation termination factor *(eRF3) & original... 0.02 OrthoFinder output from all 47 species
Aob_g04268 No alias translation termination factor *(eRF3) & original... 0.02 OrthoFinder output from all 47 species
Aop_g21103 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G096500.1 Ceric.02G096500 translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g284750 No alias Protein biosynthesis.translation termination.eRF3... 0.04 OrthoFinder output from all 47 species
Dac_g17072 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g06375 No alias translation termination factor *(eRF3) & original... 0.05 OrthoFinder output from all 47 species
Dde_g00750 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
Len_g35299 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g34425 No alias translation termination factor *(eRF3) & original... 0.02 OrthoFinder output from all 47 species
MA_10428053g0010 No alias Elongation factor 1-alpha OS=Solanum lycopersicum... 0.02 OrthoFinder output from all 47 species
Mp1g00820.1 No alias eRF3 peptide release factor 0.02 OrthoFinder output from all 47 species
Ore_g15705 No alias translation termination factor *(eRF3) & original... 0.02 OrthoFinder output from all 47 species
Pir_g16691 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g38444 No alias translation termination factor *(eRF3) & original... 0.05 OrthoFinder output from all 47 species
Smo115313 No alias Protein biosynthesis.translation termination.eRF3... 0.06 OrthoFinder output from all 47 species
Spa_g00747 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
Tin_g11299 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 413 529
IPR004161 EFTu-like_2 340 406
IPR000795 T_Tr_GTP-bd_dom 96 298
No external refs found!