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  5. Als_g61224

Als_g61224


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g61224

Target Alias Description ECC score Gene Family Method Actions
AT3G08530 No alias Clathrin, heavy chain 0.03 OrthoFinder output from all 47 species
AT3G11130 No alias Clathrin, heavy chain 0.03 OrthoFinder output from all 47 species
Aev_g20290 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12409 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Cba_g27949 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27950 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G067200.1 Ceric.06G067200 heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.11 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g10505 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
Solyc05g052510.4.1 Solyc05g052510 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Tin_g08699 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0050080 malonyl-CoA decarboxylase activity IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1431
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 850 975
IPR000547 Clathrin_H-chain/VPS_repeat 1144 1281
IPR000547 Clathrin_H-chain/VPS_repeat 1437 1579
IPR000547 Clathrin_H-chain/VPS_repeat 701 839
IPR000547 Clathrin_H-chain/VPS_repeat 557 692
IPR022365 Clathrin_H-chain_propeller_rpt 156 197
IPR022365 Clathrin_H-chain_propeller_rpt 20 55
No external refs found!