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  5. Als_g01988

Als_g01988 (ATMED14, MED14, SWP)


Aliases : ATMED14, MED14, SWP

Description : component *(MED14) of tail module of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0003954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003954_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01988

Target Alias Description ECC score Gene Family Method Actions
AT3G04740 ATMED14, MED14, SWP RNA polymerase II transcription mediators 0.03 OrthoFinder output from all 47 species
Ceric.06G040100.1 ATMED14, MED14,... component *(MED14) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
LOC_Os09g10960.1 ATMED14, MED14,... component MED14 of tail module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Len_g30748 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Lfl_g05047 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
MA_10435964g0030 ATMED14, MED14, SWP component MED14 of tail module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Mp8g13300.1 ATMED14, MED14, SWP component MED14 of tail module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Msp_g13510 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Nbi_g16571 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Pir_g05142 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008172 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Smo90823 ATMED14, MED14, SWP RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Solyc01g097320.3.1 ATMED14, MED14,... component MED14 of tail module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Spa_g04873 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Tin_g09950 ATMED14, MED14, SWP component *(MED14) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Zm00001e009618_P001 ATMED14, MED14,... component MED14 of tail module of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEA Interproscan
BP GO:0006357 regulation of transcription by RNA polymerase II IEA Interproscan
CC GO:0016592 mediator complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013947 Mediator_Med14 13 200
No external refs found!