Lfl_g11421 (EDD, EDD1)

Aliases : EDD, EDD1

Description : glycine-tRNA ligase & original description: none

Gene families : OG0005277 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005277_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g11421
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
Adi_g015460	EDD, EDD1	glycine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g13775	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0472.g072933	EDD, EDD1	glycine-tRNA ligase & original description: CDS=154-3516	0.05	OrthoFinder output from all 47 species
Ceric.32G004800.1	EDD, EDD1,...	glycine-tRNA ligase & original description:...	0.07	OrthoFinder output from all 47 species
Cre10.g433000	EDD, EDD1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.08	OrthoFinder output from all 47 species
Dcu_g01951	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g21151	EDD, EDD1	glycine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09245	EDD, EDD1	glycine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01018288001	EDD, EDD1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
Gb_13783	EDD, EDD1	glycine-tRNA ligase	0.05	OrthoFinder output from all 47 species
LOC_Os06g01400.1	EDD, EDD1, LOC_Os06g01400	glycine-tRNA ligase	0.05	OrthoFinder output from all 47 species
Mp8g04520.1	EDD, EDD1	glycine-tRNA ligase	0.05	OrthoFinder output from all 47 species
Ore_g08928	EDD, EDD1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g28161	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013857	EDD, EDD1	EC_1.14 oxidoreductase acting on paired donor with...	0.02	OrthoFinder output from all 47 species
Solyc01g090200.4.1	EDD, EDD1, Solyc01g090200	glycine-tRNA ligase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004820	glycine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006426	glycyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	HCCA
MF	GO:0004827	proline-tRNA ligase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008184	glycogen phosphorylase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002310	Gly-tRNA_ligase_asu	128	405
IPR015944	Gly-tRNA-synth_bsu	440	986

External Links

No external refs found!

Lfl_g11421 (EDD, EDD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation