Ceric.30G043100.1 (GYRA, Ceric.30G043100)

Aliases : GYRA, Ceric.30G043100

Description : subunit A of DNA gyrase complex & original description: pacid=50608222 polypeptide=Ceric.30G043100.1.p locus=Ceric.30G043100 ID=Ceric.30G043100.1.v2.1 annot-version=v2.1

Gene families : OG0005091 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005091_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.30G043100.1
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AT3G10690	GYRA	DNA GYRASE A	0.04	OrthoFinder output from all 47 species
Aop_g04531	GYRA	subunit A of DNA gyrase complex & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g03966	GYRA	subunit A of DNA gyrase complex & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01027314001	GYRA	Cell cycle.organelle machineries.DNA replication.DNA...	0.04	OrthoFinder output from all 47 species
GSVIVT01027315001	GYRA	Cell cycle.organelle machineries.DNA replication.DNA...	0.04	OrthoFinder output from all 47 species
Gb_03542	GYRA	subunit A of DNA gyrase complex	0.03	OrthoFinder output from all 47 species
Lfl_g18810	GYRA	subunit A of DNA gyrase complex & original description: none	0.04	OrthoFinder output from all 47 species
MA_83204g0010	GYRA	DNA gyrase subunit A, chloroplastic/mitochondrial...	0.03	OrthoFinder output from all 47 species
Mp5g22710.1	GYRA	subunit A of DNA gyrase complex	0.11	OrthoFinder output from all 47 species
Msp_g13382	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g01387	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g05083	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14125	GYRA	subunit A of DNA gyrase complex & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015419	GYRA	subunit A of DNA gyrase complex & original description:...	0.06	OrthoFinder output from all 47 species
Solyc01g096900.3.1	GYRA, Solyc01g096900	subunit A of DNA gyrase complex	0.04	OrthoFinder output from all 47 species
Spa_g17994	GYRA	subunit A of DNA gyrase complex & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g15027	GYRA	subunit A of DNA gyrase complex & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006691	GyrA/parC_rep	849	895
IPR006691	GyrA/parC_rep	632	676
IPR006691	GyrA/parC_rep	784	824
IPR006691	GyrA/parC_rep	909	955
IPR006691	GyrA/parC_rep	737	777
IPR006691	GyrA/parC_rep	680	730
IPR002205	Topo_IIA_dom_A	156	591

External Links

No external refs found!

Ceric.30G043100.1 (GYRA, Ceric.30G043100)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation