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  5. Spa_g56471

Spa_g56471 (PTAC16)


Aliases : PTAC16

Description : cofactor of plastid-encoded RNA polymerase *(TAC16) & original description: none


Gene families : OG0007234 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007234_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56471
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00257120 PTAC16,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 OrthoFinder output from all 47 species
AT3G46780 PTAC16 plastid transcriptionally active 16 0.05 OrthoFinder output from all 47 species
Adi_g011791 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.1 OrthoFinder output from all 47 species
Aev_g02347 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Ala_g09140 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Als_g03152 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Aob_g18050 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Aop_g68943 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene18545.t1 PTAC16, Aspi01Gene18545 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Azfi_s0072.g036982 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Cba_g03987 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Ceric.19G051100.1 PTAC16, Ceric.19G051100 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.09 OrthoFinder output from all 47 species
Cre02.g081250 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g08836 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Dcu_g01601 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Dde_g25352 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Ehy_g03814 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01024905001 PTAC16 RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 OrthoFinder output from all 47 species
Gb_02666 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os05g22614.1 PTAC16, LOC_Os05g22614 TAC16 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Len_g15964 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.08 OrthoFinder output from all 47 species
Lfl_g39154 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
MA_806g0020 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Mp8g16460.1 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species
Msp_g05519 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Nbi_g10293 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Ore_g05533 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Pir_g07718 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Pnu_g17360 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.02 OrthoFinder output from all 47 species
Solyc06g005710.3.1 PTAC16, Solyc06g005710 TAC16 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Tin_g08369 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Zm00001e026770_P002 PTAC16, Zm00001e026770 TAC16 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 687 754
IPR016040 NAD(P)-bd_dom 155 367
No external refs found!