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  5. Spa_g40504

Spa_g40504 (RPE, EMB2728)


Aliases : RPE, EMB2728

Description : EC_5.1 racemase or epimerase & original description: none


Gene families : OG0004751 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004751_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g40504

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00063510 RPE, EMB2728,... Photosynthesis.calvin cycle.phosphopentose epimerase 0.08 OrthoFinder output from all 47 species
AT5G61410 RPE, EMB2728 D-ribulose-5-phosphate-3-epimerase 0.05 OrthoFinder output from all 47 species
Adi_g020221 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14485 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g14486 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g01466 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08095 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27840 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g32397 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g07259 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene18480.t1 RPE, EMB2728,... EC_5.1 racemase or epimerase & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0149.g053240 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: CDS=196-1059 0.03 OrthoFinder output from all 47 species
Cba_g08756 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g64230 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G052500.1 RPE, EMB2728,... EC_5.1 racemase or epimerase & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.30G051300.1 RPE, EMB2728,... EC_5.1 racemase or epimerase & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020564.39 RPE, EMB2728 Ribulose-phosphate 3-epimerase, chloroplastic... 0.06 OrthoFinder output from all 47 species
Cre12.g511900 RPE, EMB2728 Photosynthesis.calvin cycle.phosphopentose epimerase 0.03 OrthoFinder output from all 47 species
Dac_g15437 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g42634 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g14724 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06530 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01007976001 RPE, EMB2728 Photosynthesis.calvin cycle.phosphopentose epimerase 0.11 OrthoFinder output from all 47 species
Gb_19425 RPE, EMB2728 phosphopentose epimerase 0.08 OrthoFinder output from all 47 species
LOC_Os03g07300.1 RPE, EMB2728,... phosphopentose epimerase 0.11 OrthoFinder output from all 47 species
Len_g19382 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g06506 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g11661 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.08 OrthoFinder output from all 47 species
MA_92814g0010 RPE, EMB2728 phosphopentose epimerase 0.06 OrthoFinder output from all 47 species
Mp6g10960.1 RPE, EMB2728 phosphopentose epimerase 0.1 OrthoFinder output from all 47 species
Msp_g05510 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g19497 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.13 OrthoFinder output from all 47 species
Pir_g06182 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.13 OrthoFinder output from all 47 species
Pnu_g08509 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g61783 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.11 OrthoFinder output from all 47 species
Sam_g27386 No alias EC_5.1 racemase or epimerase & original description: none 0.04 OrthoFinder output from all 47 species
Smo228435 RPE, EMB2728 Photosynthesis.calvin cycle.phosphopentose epimerase 0.07 OrthoFinder output from all 47 species
Solyc03g115820.3.1 RPE, EMB2728,... phosphopentose epimerase 0.09 OrthoFinder output from all 47 species
Tin_g16249 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e000521_P003 RPE, EMB2728,... phosphopentose epimerase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000056 Ribul_P_3_epim-like 144 342
No external refs found!