LOC_Os12g25710.1 (LOC_Os12g25710)

Aliases : LOC_Os12g25710

Description : proline-tRNA ligase

Gene families : OG0001971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g25710.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00127050	evm_27.TU.AmTr_v1...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
AT3G62120	No alias	Class II aaRS and biotin synthetases superfamily protein	0.06	OrthoFinder output from all 47 species
Adi_g010533	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g05302	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.3	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Cre09.g406200	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Cre10.g429100	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Dac_g15024	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g02781	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01028250001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	OrthoFinder output from all 47 species
MA_19799g0010	No alias	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
MA_8321978g0010	No alias	Proline--tRNA ligase, cytoplasmic OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp2g25470.1	No alias	proline-tRNA ligase	0.04	OrthoFinder output from all 47 species
Msp_g03194	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g12513	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Smo74713	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	OrthoFinder output from all 47 species
Solyc06g068320.3.1	Solyc06g068320	proline-tRNA ligase	0.05	OrthoFinder output from all 47 species
Spa_g09904	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g15505	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007170_P001	Zm00001e007170	proline-tRNA ligase	0.11	OrthoFinder output from all 47 species
Zm00001e024670_P003	Zm00001e024670	proline-tRNA ligase	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0004827	proline-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006433	prolyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004019	adenylosuccinate synthase activity	IEP	HCCA
MF	GO:0005047	signal recognition particle binding	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016061	Pro-tRNA_ligase_II_C	437	510
IPR004154	Anticodon-bd	314	409
IPR002314	aa-tRNA-synt_IIb	128	295

External Links

No external refs found!

LOC_Os12g25710.1 (LOC_Os12g25710)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation