Zm00001e025590_P001 (RPL3P, Zm00001e025590)

Aliases : RPL3P, Zm00001e025590

Description : component mtRPL3 of large ribosomal subunit proteome

Gene families : OG0005827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005827_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e025590_P001
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00094390	RPL3P,...	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
AT3G17465	RPL3P	ribosomal protein L3 plastid	0.06	OrthoFinder output from all 47 species
Als_g04883	RPL3P	component *(uL3m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g02098	RPL3P	component *(uL3m) of large mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0003.g007996	RPL3P	component *(uL3m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.33G054400.1	RPL3P, Ceric.33G054400	component *(uL3m) of large mitoribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001574.8	RPL3P	No description available	0.01	OrthoFinder output from all 47 species
Cre01.g022250	RPL3P	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
GSVIVT01017688001	RPL3P	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Gb_28367	RPL3P	component mtRPL3 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
LOC_Os01g14830.1	RPL3P, LOC_Os01g14830	component mtRPL3 of large ribosomal subunit proteome	0.17	OrthoFinder output from all 47 species
MA_14906g0010	RPL3P	component mtRPL3 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
MA_16256g0010	RPL3P	50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Mp4g00030.1	RPL3P	component mtRPL3 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Pp3c23_18210V3.1	RPL3P, Pp3c23_18210	ribosomal protein L3 plastid	0.01	OrthoFinder output from all 47 species
Sam_g07642	No alias	component *(uL3m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g07643	No alias	component *(uL3m) of large mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Smo145395	RPL3P	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Spa_g06067	RPL3P	component *(uL3m) of large mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Tin_g14446	RPL3P	component *(uL3m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006188	IMP biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016842	amidine-lyase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046040	IMP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	165	252

External Links

No external refs found!

Zm00001e025590_P001 (RPL3P, Zm00001e025590)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation