1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_36757

Gb_36757 (NUA, AtTPR)


Aliases : NUA, AtTPR

Description : NUA nucleoporin of nuclear pore complex


Gene families : OG0003960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36757
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00124730 NUA, AtTPR,... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
AT1G79280 NUA, AtTPR nuclear pore anchor 0.05 OrthoFinder output from all 47 species
Adi_g055513 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
Aev_g02612 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.05 OrthoFinder output from all 47 species
Ala_g07174 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.06 OrthoFinder output from all 47 species
Als_g57232 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Aob_g26121 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Cba_g33695 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G046200.1 NUA, AtTPR,... nucleoporin of nuclear pore complex *(NUA) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.46 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Dcu_g03218 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.07 OrthoFinder output from all 47 species
Dde_g09517 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g15153 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01036698001 NUA, AtTPR Protein translocation.nucleus.nucleocytoplasmic... 0.11 OrthoFinder output from all 47 species
LOC_Os02g50790.2 LOC_Os02g50790 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g50799.1 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Len_g13910 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g03520 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
MA_10287420g0010 NUA, AtTPR no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10435343g0040 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
MA_109011g0010 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
MA_33097g0010 NUA, AtTPR Nuclear-pore anchor OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_929786g0010 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Mp2g14600.1 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Msp_g15712 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Ore_g18802 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Pir_g20507 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g44472 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
Sam_g18065 No alias nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Smo444132 NUA, AtTPR Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Solyc06g053570.2.1 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Spa_g10543 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Tin_g12694 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e023916_P004 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006606 protein import into nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012929 TPR/MLP1 1049 1176
No external refs found!