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  5. Gb_30926

Gb_30926


Description : GBF-interacting protein 1 OS=Arabidopsis thaliana (sp|q8vzs6|gip1_arath : 86.7)


Gene families : OG0000712 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000712_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30926
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00072820 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT3G07660 No alias Kinase-related protein of unknown function (DUF1296) 0.02 OrthoFinder output from all 47 species
Adi_g008163 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g008233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074702 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g087204 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g120900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g129391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04483 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12159.t2 Aspi01Gene12159 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007708 No alias not classified & original description: CDS=120-2903 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044541 No alias not classified & original description: CDS=280-3048 0.02 OrthoFinder output from all 47 species
Cba_g26977 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G033400.1 Ceric.02G033400 not classified & original description: pacid=50584302... 0.1 OrthoFinder output from all 47 species
Ceric.27G004200.1 Ceric.27G004200 not classified & original description: pacid=50604818... 0.02 OrthoFinder output from all 47 species
Ceric.29G083800.1 Ceric.29G083800 not classified & original description: pacid=50624429... 0.04 OrthoFinder output from all 47 species
Dac_g07091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04008 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g07889 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15721 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g19941 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01021389001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01030121001 No alias GBF-interacting protein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os01g47430.1 LOC_Os01g47430 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os05g49180.1 LOC_Os05g49180 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g08670.1 LOC_Os09g08670 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g03459 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g11160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15622 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_113167g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_137710g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_60376g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g06750.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g17436 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28851 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g00658 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024848 No alias not classified & original description: CDS=93-2615 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0233.g026486 No alias not classified & original description: CDS=154-2919 0.06 OrthoFinder output from all 47 species
Sam_g50960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo438753 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc02g071180.3.1 Solyc02g071180 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc05g018750.4.1 Solyc05g018750 GBF-interacting protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g08817 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02140 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e020237_P001 Zm00001e020237 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e022213_P003 Zm00001e022213 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e026550_P001 Zm00001e026550 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e028004_P001 Zm00001e028004 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009719 GIP1_N 13 72
No external refs found!