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  5. Gb_28496

Gb_28496 (emb2458)


Aliases : emb2458

Description : Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana (sp|f4j3n2|ftsi5_arath : 1084.0)


Gene families : OG0007060 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007060_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28496
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00154620 emb2458,... Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species
AT3G04340 emb2458 FtsH extracellular protease family 0.12 OrthoFinder output from all 47 species
Aop_g58398 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Cba_g13698 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.05 OrthoFinder output from all 47 species
Ceric.26G060900.1 emb2458, Ceric.26G060900 component *(FtsHi) of protein translocation ATPase motor... 0.04 OrthoFinder output from all 47 species
GSVIVT01021791001 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.08 OrthoFinder output from all 47 species
Lfl_g22625 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.04 OrthoFinder output from all 47 species
MA_9758g0010 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species
Mp6g10290.1 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.05 OrthoFinder output from all 47 species
Nbi_g10096 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Ore_g16438 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.05 OrthoFinder output from all 47 species
Ppi_g03996 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Sam_g14588 No alias component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Solyc02g032960.2.1 emb2458, Solyc02g032960 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 870 1003
IPR000642 Peptidase_M41 1147 1326
No external refs found!