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  5. Cpa|evm.model.tig00000829.21

Cpa|evm.model.tig00000829.21


Description : Protein biosynthesis.translation elongation.eEF1B eEF1A-GDP-recycling complex.eEF1B-gamma component


Gene families : OG0001535 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001535_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000829.21
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G09640 No alias Translation elongation factor EF1B, gamma chain 0.02 OrthoFinder output from all 47 species
AT1G57720 No alias Translation elongation factor EF1B, gamma chain 0.04 OrthoFinder output from all 47 species
Adi_g017751 No alias component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling... 0.02 OrthoFinder output from all 47 species
Aob_g14268 No alias component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling... 0.02 OrthoFinder output from all 47 species
Azfi_s0051.g031261 No alias component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling... 0.03 OrthoFinder output from all 47 species
LOC_Os02g12794.3 LOC_Os02g12794 component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.02 OrthoFinder output from all 47 species
LOC_Os02g12800.1 LOC_Os02g12800 component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.02 OrthoFinder output from all 47 species
LOC_Os06g37440.1 LOC_Os06g37440 component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.01 OrthoFinder output from all 47 species
Len_g17738 No alias component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling... 0.04 OrthoFinder output from all 47 species
Mp7g04100.1 No alias component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.04 OrthoFinder output from all 47 species
Nbi_g40134 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g27591 No alias component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling... 0.02 OrthoFinder output from all 47 species
Ppi_g43035 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g07305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13003 No alias component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling... 0.02 OrthoFinder output from all 47 species
Sam_g13004 No alias component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling... 0.02 OrthoFinder output from all 47 species
Sam_g50575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e014465_P001 Zm00001e014465 component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.02 OrthoFinder output from all 47 species
Zm00001e024937_P001 Zm00001e024937 component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.01 OrthoFinder output from all 47 species
Zm00001e030647_P003 Zm00001e030647 component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.02 OrthoFinder output from all 47 species
Zm00001e037277_P002 Zm00001e037277 component eEF1B-gamma of eEF1B eEF1A-GDP-recycling complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001662 EF1B_G_C 378 483
IPR004045 Glutathione_S-Trfase_N 137 210
IPR004046 GST_C 243 314
No external refs found!