AT4G26600

Description : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Gene families : OG0004210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004210_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G26600

Target	Alias	Description	ECC score	Gene Family Method
Aev_g02479	No alias	rRNA methyltransferase *(NOP2) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05130	OLI2	rRNA methyltransferase *(NOP2) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g007898	OLI2	rRNA methyltransferase *(NOP2) & original description: CDS=1-1743	0.07	OrthoFinder output from all 47 species
Ceric.38G044600.1	Ceric.38G044600	rRNA methyltransferase *(NOP2) & original description:...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000114.21	OLI2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Cre06.g273413	OLI2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	OrthoFinder output from all 47 species
Dcu_g13909	No alias	rRNA methyltransferase *(NOP2) & original description: none	0.07	OrthoFinder output from all 47 species
Ehy_g09182	No alias	rRNA methyltransferase *(NOP2) & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01014717001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
GSVIVT01014718001	OLI2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Gb_02482	No alias	OLI2 LSU processome maturation factor	0.07	OrthoFinder output from all 47 species
LOC_Os02g49270.1	LOC_Os02g49270	OLI2 LSU processome maturation factor	0.12	OrthoFinder output from all 47 species
LOC_Os09g37860.1	LOC_Os09g37860	OLI2 LSU processome maturation factor	0.22	OrthoFinder output from all 47 species
Lfl_g01804	OLI2	rRNA methyltransferase *(NOP2) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10427534g0030	No alias	OLI2 LSU processome maturation factor	0.09	OrthoFinder output from all 47 species
Mp6g04100.1	No alias	OLI2 LSU processome maturation factor	0.16	OrthoFinder output from all 47 species
Ore_g19331	OLI2	rRNA methyltransferase *(NOP2) & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g12515	No alias	rRNA methyltransferase *(NOP2) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15412	OLI2	rRNA methyltransferase *(NOP2) & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016553	No alias	rRNA methyltransferase *(NOP2) & original description: CDS=1-1836	0.03	OrthoFinder output from all 47 species
Sam_g17866	No alias	rRNA methyltransferase *(NOP2) & original description: none	0.12	OrthoFinder output from all 47 species
Smo437511	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc02g079415.1.1	Solyc02g079415	OLI2 LSU processome maturation factor	0.07	OrthoFinder output from all 47 species
Solyc07g052110.4.1	Solyc07g052110	OLI2 LSU processome maturation factor	0.09	OrthoFinder output from all 47 species
Spa_g52054	No alias	rRNA methyltransferase *(NOP2) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g07555	OLI2	rRNA methyltransferase *(NOP2) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e015692_P001	Zm00001e015692	OLI2 LSU processome maturation factor	0.13	OrthoFinder output from all 47 species
Zm00001e023394_P001	Zm00001e023394	OLI2 LSU processome maturation factor	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005730	nucleolus	ISS	Interproscan
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000741	karyogamy	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004824	lysine-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006430	lysyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007005	mitochondrion organization	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009561	megagametogenesis	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034599	cellular response to oxidative stress	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
CC	GO:0042645	mitochondrial nucleoid	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051131	chaperone-mediated protein complex assembly	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
BP	GO:0051260	protein homooligomerization	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0062197	cellular response to chemical stress	IEP	HCCA
BP	GO:0070407	oxidation-dependent protein catabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031341	Methyltr_RsmF_N	254	331
IPR001678	MeTrfase_RsmB/NOP2	335	545

External Links

No external refs found!

AT4G26600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation