- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LHCA1
Description : component *(LHCa1) of LHC-I complex & original description: none
Gene families : OG0002748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002748_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pnu_g06292 | |
| Cluster | HCCA: Cluster_4 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00175p00040360 | LHCA1,... | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.06 | OrthoFinder output from all 47 species | |
| AT3G54890 | LHCA1 | photosystem I light harvesting complex gene 1 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g076858 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g43112 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g16965 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g13726 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g25107 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g03905 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g39130 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g08720 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene31723.t1 | LHCA1, Aspi01Gene31723 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0549.g076444 | LHCA1 | component *(LHCa1) of LHC-I complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g09880 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g26607 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.07G087800.1 | LHCA1, Ceric.07G087800 | component *(LHCa1) of LHC-I complex & original... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.12G030000.1 | LHCA1, Ceric.12G030000 | component *(LHCa1) of LHC-I complex & original... | 0.06 | OrthoFinder output from all 47 species | |
| Cre06.g283050 | LHCA1 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g06854 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g00729 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g03557 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g34042 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g07919 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g21883 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01016295001 | LHCA1 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_18375 | LHCA1 | component LHCa1 of LHC-I complex | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g21590.1 | LHCA1, LOC_Os06g21590 | component LHCa1 of LHC-I complex | 0.07 | OrthoFinder output from all 47 species | |
| Len_g24144 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g30462 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g06978 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10431493g0010 | LHCA1 | component LHCa1 of LHC-I complex | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g15420.1 | LHCA1 | component LHCa1 of LHC-I complex | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g05868 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g00268 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g07161 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g30412 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g36756 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g45079 | LHCA1 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g01807 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g01863 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c3_12510V3.1 | LHCA1, Pp3c3_12510 | photosystem I light harvesting complex gene 1 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0079.g017788 | LHCA1 | component *(LHCa1) of LHC-I complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g14315 | No alias | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14326 | No alias | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g19176 | No alias | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo423144 | LHCA1 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g056050.3.1 | LHCA1, Solyc05g056050 | component LHCa1 of LHC-I complex | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g04551 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g13153 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g13154 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g09881 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g19220 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e013742_P001 | LHCA1, Zm00001e013742 | component LHCa1 of LHC-I complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e025141_P001 | LHCA1, Zm00001e025141 | component LHCa1 of LHC-I complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005261 | monoatomic cation channel activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006414 | translational elongation | IEP | HCCA |
| BP | GO:0006465 | signal peptide processing | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
| MF | GO:0008324 | monoatomic cation transmembrane transporter activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0015075 | monoatomic ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015252 | proton channel activity | IEP | HCCA |
| MF | GO:0015267 | channel activity | IEP | HCCA |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| BP | GO:0016485 | protein processing | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | HCCA |
| BP | GO:0051604 | protein maturation | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 63 | 217 |
| No external refs found! |