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  5. Cba_g65626

Cba_g65626


Description : component *(uS10c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0005087 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g65626

Target Alias Description ECC score Gene Family Method Actions
AT3G13120 No alias Ribosomal protein S10p/S20e family protein 0.04 OrthoFinder output from all 47 species
Als_g12392 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Als_g12393 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aob_g01396 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g01016 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008359 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013794 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.34G039900.1 Ceric.34G039900 component *(uS10c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cre03.g195650 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Dac_g37977 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g02308 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Dcu_g40455 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g03129 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Ehy_g00382 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01014640001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
LOC_Os03g10060.1 LOC_Os03g10060 component psRPS10 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Len_g05104 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Lfl_g00728 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
MA_10432148g0010 No alias component psRPS10 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Mp7g14220.1 No alias component psRPS10 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Nbi_g28161 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pnu_g14839 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c20_8830V3.1 Pp3c20_8830 Ribosomal protein S10p/S20e family protein 0.01 OrthoFinder output from all 47 species
Ppi_g10665 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009907 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g12677 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo118761 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Solyc10g006030.3.1 Solyc10g006030 component psRPS10 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Spa_g54664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09762 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e000789_P001 Zm00001e000789 component psRPS10 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e038796_P002 Zm00001e038796 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0051743 red chlorophyll catabolite reductase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 97 191
No external refs found!