Cba_g25946


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g25946

Target Alias Description ECC score Gene Family Method Actions
Adi_g017907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g08664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g15637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G037000.1 Ceric.12G037000 not classified & original description: pacid=50600637... 0.03 OrthoFinder output from all 47 species
Dac_g23808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16749 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g01887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006174 No alias not classified & original description: CDS=16-1263 0.02 OrthoFinder output from all 47 species
Spa_g15086 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g12024 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 398 444
IPR002885 Pentatricopeptide_repeat 316 376
IPR002885 Pentatricopeptide_repeat 244 292
IPR002885 Pentatricopeptide_repeat 153 196
No external refs found!