Sam_g39434

Description : methionine-tRNA ligase & original description: none

Gene families : OG0004238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004238_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g39434
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00101170	OVA1,...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	OrthoFinder output from all 47 species
AT3G55400	OVA1	methionyl-tRNA synthetase / methionine--tRNA ligase /...	0.03	OrthoFinder output from all 47 species
Als_g16251	OVA1	methionine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12932	OVA1	methionine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene56472.t1	OVA1, Aspi01Gene56472	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.28G028400.1	OVA1, Ceric.28G028400	methionine-tRNA ligase & original description:...	0.02	OrthoFinder output from all 47 species
Dcu_g48825	OVA1	methionine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os03g11120.1	OVA1, LOC_Os03g11120	methionine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Len_g18280	OVA1	methionine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g16770.1	OVA1	methionine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Ore_g25309	OVA1	methionine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g05249	OVA1	methionine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g13764	OVA1	methionine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016381	OVA1	methionine-tRNA ligase & original description: CDS=128-1948	0.04	OrthoFinder output from all 47 species
Solyc05g054600.3.1	OVA1, Solyc05g054600	methionine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Zm00001e000706_P004	OVA1, Zm00001e000706	methionine-tRNA ligase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
MF	GO:0004424	imidazoleglycerol-phosphate dehydratase activity	IEP	HCCA
BP	GO:0006547	histidine metabolic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041872	Anticodon_Met	453	580
IPR002300	aa-tRNA-synth_Ia	61	156
IPR015413	Methionyl/Leucyl_tRNA_Synth	197	424

External Links

No external refs found!

Sam_g39434

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation