Sam_g07872


Description : not classified & original description: none


Gene families : OG0003847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003847_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07872

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00130p00051210 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g011016 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13897 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04590 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0183.g056499 No alias not classified & original description: CDS=145-1983 0.03 OrthoFinder output from all 47 species
Cba_g66634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000492.83 No alias No description available 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.7 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre01.g027850 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre06.g274650 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g15806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01471 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_08986 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g13970.2 LOC_Os02g13970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g01848 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10045090g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g10990.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g04615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11057 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g03597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07605 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g13881 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011931 No alias not classified & original description: CDS=112-1842 0.04 OrthoFinder output from all 47 species
Smo170011 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc02g072160.4.1 Solyc02g072160 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g09147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g28117 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e024909_P003 Zm00001e024909 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 424 522
IPR016040 NAD(P)-bd_dom 112 184
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 251 412
No external refs found!