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  5. Aob_g12039

Aob_g12039 (emb1579)


Aliases : emb1579

Description : not classified & original description: none


Gene families : OG0003544 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003544_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g12039
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00266660 emb1579,... No description available 0.02 OrthoFinder output from all 47 species
AT2G03150 emb1579 ATP/GTP-binding protein family 0.06 OrthoFinder output from all 47 species
Adi_g010843 emb1579 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g068346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38938 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029908 emb1579 not classified & original description: CDS=223-3273 0.04 OrthoFinder output from all 47 species
Ceric.12G096000.1 emb1579, Ceric.12G096000 not classified & original description: pacid=50600642... 0.03 OrthoFinder output from all 47 species
Cre06.g283634 No alias No description available 0.05 OrthoFinder output from all 47 species
Dcu_g17106 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019950001 emb1579 No description available 0.04 OrthoFinder output from all 47 species
Gb_35997 emb1579 no description available(sp|f4is91|rsa1_arath : 258.0) 0.03 OrthoFinder output from all 47 species
Len_g14277 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16958 emb1579 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp7g18160.1 emb1579 no description available(sp|f4is91|rsa1_arath : 184.0) 0.02 OrthoFinder output from all 47 species
Ore_g13779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g24325 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46799 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo443360 emb1579 No description available 0.03 OrthoFinder output from all 47 species
Solyc04g008680.4.1 emb1579, Solyc04g008680 no description available(sp|f4is91|rsa1_arath : 275.0) 0.06 OrthoFinder output from all 47 species
Spa_g30417 emb1579 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21695 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030655_P003 emb1579, Zm00001e030655 no description available(sp|f4is91|rsa1_arath : 304.0) 0.06 OrthoFinder output from all 47 species
Zm00001e037178_P001 emb1579, Zm00001e037178 no description available(sp|f4is91|rsa1_arath : 313.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR045354 BURAN 453 538
IPR025954 DBC1/CARP1_inactive_NUDIX_dom 559 674
No external refs found!