Dde_g51663 (UPF1, ATUPF1, LBA1)

Aliases : UPF1, ATUPF1, LBA1

Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none

Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g51663

Target	Alias	Description	ECC score	Gene Family Method
AT5G47010	UPF1, ATUPF1, LBA1	RNA helicase, putative	0.06	OrthoFinder output from all 47 species
Aev_g29734	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Ala_g16050	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Als_g15234	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Als_g22322	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0066.g036066	UPF1, ATUPF1, LBA1	not classified & original description: CDS=178-2511	0.04	OrthoFinder output from all 47 species
Dcu_g11492	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Dcu_g20574	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Ehy_g22041	UPF1, ATUPF1, LBA1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013247001	UPF1, ATUPF1, LBA1	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.03	OrthoFinder output from all 47 species
Gb_22830	UPF1, ATUPF1, LBA1	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species
LOC_Os07g31340.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.04	OrthoFinder output from all 47 species
MA_10436671g0010	UPF1, ATUPF1, LBA1	Regulator of nonsense transcripts 1 homolog...	0.02	OrthoFinder output from all 47 species
Mp1g01200.1	UPF1, ATUPF1, LBA1	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species
Ppi_g52670	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Zm00001e010427_P002	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003724	RNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019781	NEDD8 activating enzyme activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0045116	protein neddylation	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041677	DNA2/NAM7_AAA_11	609	706
IPR041679	DNA2/NAM7-like_C	716	911
IPR006935	Helicase/UvrB_N	505	571
IPR018999	UPF1_CH/ZBD	155	306
IPR040812	UPF1_1B_dom	358	447

External Links

No external refs found!

Dde_g51663 (UPF1, ATUPF1, LBA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation