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  5. Dde_g23302

Dde_g23302


Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g23302

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 OrthoFinder output from all 47 species
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.02 OrthoFinder output from all 47 species
Als_g03555 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g43401 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06850 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030788 No alias linker histone *(H1) & original description: CDS=1-786 0.05 OrthoFinder output from all 47 species
Ceric.30G041600.1 Ceric.30G041600 linker histone *(H1) & original description:... 0.03 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.04 OrthoFinder output from all 47 species
Ehy_g05478 No alias linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.02 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.04 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Lfl_g27513 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Pir_g20263 No alias linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g11041 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Spa_g09322 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18792 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e006018_P006 Zm00001e006018 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Zm00001e007189_P001 HIS1-3, Zm00001e007189 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Zm00001e011859_P001 Zm00001e011859 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Zm00001e030798_P003 HON4, Zm00001e030798 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006535 cysteine biosynthetic process from serine IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0009001 serine O-acetyltransferase activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016412 serine O-acyltransferase activity IEP HCCA
MF GO:0016413 O-acetyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035434 copper ion transmembrane transport IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 95 162
No external refs found!