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  5. Aop_g64058

Aop_g64058 (VALRS, TWN2)


Aliases : VALRS, TWN2

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none


Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g64058
Cluster HCCA: Cluster_314

Target Alias Description ECC score Gene Family Method Actions
Gb_09296 VALRS, TWN2 valine-tRNA ligase 0.04 OrthoFinder output from all 47 species
LOC_Os03g48850.1 VALRS, TWN2,... valine-tRNA ligase 0.03 OrthoFinder output from all 47 species
MA_10426363g0020 VALRS, TWN2 valine-tRNA ligase 0.02 OrthoFinder output from all 47 species
MA_583090g0010 VALRS, TWN2 Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g01242 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Smo141956 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Spa_g12844 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e010301_P002 VALRS, TWN2,... valine-tRNA ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0070531 BRCA1-A complex IEP HCCA
CC GO:0070552 BRISC complex IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 865 1018
IPR002300 aa-tRNA-synth_Ia 200 820
No external refs found!