Aliases : PTAC3
Description : cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) & original description: none
Gene families : OG0004426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004426_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G04260 | PTAC3 | plastid transcriptionally active 3 | 0.06 | OrthoFinder output from all 47 species | |
Adi_g020728 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g41836 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g10889 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.39G010500.1 | PTAC3, Ceric.39G010500 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.05 | OrthoFinder output from all 47 species | |
Cre12.g497350 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g16824 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os10g32540.1 | PTAC3, LOC_Os10g32540 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.07 | OrthoFinder output from all 47 species | |
MA_10433475g0010 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
Mp2g04680.1 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.09 | OrthoFinder output from all 47 species | |
Ore_g37614 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.07 | OrthoFinder output from all 47 species | |
Ppi_g02363 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g13657 | No alias | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.02 | OrthoFinder output from all 47 species | |
Solyc04g050540.4.1 | PTAC3, Solyc04g050540 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | HCCA |
MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
MF | GO:0004649 | poly(ADP-ribose) glycohydrolase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004820 | glycine-tRNA ligase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006265 | DNA topological change | IEP | HCCA |
BP | GO:0006282 | regulation of DNA repair | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0048583 | regulation of response to stimulus | IEP | HCCA |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0071103 | DNA conformation change | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0080134 | regulation of response to stress | IEP | HCCA |
BP | GO:0080135 | regulation of cellular response to stress | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:2001020 | regulation of response to DNA damage stimulus | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003034 | SAP_dom | 653 | 684 |
No external refs found! |