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  5. Aop_g11428

Aop_g11428


Description : scaffold component *(Nop56) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g11428
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00226680 NOP56,... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.06 OrthoFinder output from all 47 species
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.04 OrthoFinder output from all 47 species
Azfi_s0061.g034932 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cba_g57048 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001073.20 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Cre12.g525200 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
Dac_g14259 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.06 OrthoFinder output from all 47 species
GSVIVT01008506001 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.06 OrthoFinder output from all 47 species
Gb_05243 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 OrthoFinder output from all 47 species
LOC_Os03g22880.1 NOP56, LOC_Os03g22880 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species
Len_g11157 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.05 OrthoFinder output from all 47 species
Lfl_g03084 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
MA_10395559g0010 No alias Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_9961528g0010 NOP56 Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp2g23840.1 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.07 OrthoFinder output from all 47 species
Nbi_g26532 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Ore_g37588 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Smo167367 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Solyc01g100570.4.1 NOP56, Solyc01g100570 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 OrthoFinder output from all 47 species
Spa_g48006 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Zm00001e001676_P001 NOP56, Zm00001e001676 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.06 OrthoFinder output from all 47 species
Zm00001e038196_P002 NOP56, Zm00001e038196 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 8 73
IPR002687 Nop_dom 181 413
No external refs found!