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  5. Aop_g07923

Aop_g07923 (RAD23B, RAD23)


Aliases : RAD23B, RAD23

Description : ubiquitin-proteasome shuttle factor *(RAD23) & original description: none


Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g07923
Cluster HCCA: Cluster_314

Target Alias Description ECC score Gene Family Method Actions
Adi_g081473 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Als_g51273 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.05 OrthoFinder output from all 47 species
Ceric.18G040300.1 RAD23B, RAD23,... ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.21 RAD23D Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre08.g366400 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g42383 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05747 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g08300.1 RAD23B, RAD23,... shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species
LOC_Os06g15360.1 RAD23-3, RAD23C,... shuttle protein (RAD23) 0.04 OrthoFinder output from all 47 species
LOC_Os08g33340.1 RAD23D, LOC_Os08g33340 shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
Len_g13341 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
MA_47454g0010 RAD23D shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
Nbi_g09383 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Ore_g43759 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Pir_g37808 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Smo77427 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc03g117780.2.1 RAD23B, RAD23,... shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
Spa_g06239 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Spa_g18087 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Tin_g08949 RAD23-3, RAD23C ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Tin_g19292 RAD23B, RAD23 ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.05 OrthoFinder output from all 47 species
Tin_g30534 RAD23B, RAD23 ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR015360 XPC-bd 279 334
IPR015940 UBA 159 197
IPR015940 UBA 361 396
IPR000626 Ubiquitin-like_dom 3 76
No external refs found!