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  5. Ala_g16234

Ala_g16234 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g16234
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Adi_g114117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g05987 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g15637 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g16334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0336.g065546 No alias not classified & original description: CDS=1-2493 0.05 OrthoFinder output from all 47 species
Cba_g25946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g57127 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G037000.1 Ceric.12G037000 not classified & original description: pacid=50600637... 0.03 OrthoFinder output from all 47 species
Ceric.1Z219100.1 Ceric.1Z219100 not classified & original description: pacid=50617071... 0.06 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.04 OrthoFinder output from all 47 species
Dac_g23808 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g08780 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g09299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08308 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g14407 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37245 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g40231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo441948 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.02 OrthoFinder output from all 47 species
Spa_g15086 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g12024 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003951 NAD+ kinase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006741 NADP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 252 306
IPR002885 Pentatricopeptide_repeat 506 553
IPR002885 Pentatricopeptide_repeat 477 503
IPR002885 Pentatricopeptide_repeat 439 462
No external refs found!