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  5. Ala_g14984

Ala_g14984


Description : regulatory component *(RPN2) of 26S proteasome & original description: none


Gene families : OG0003234 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003234_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g14984
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G04810 No alias 26S proteasome regulatory complex, non-ATPase... 0.02 OrthoFinder output from all 47 species
AT2G32730 No alias 26S proteasome regulatory complex, non-ATPase... 0.03 OrthoFinder output from all 47 species
Adi_g018527 No alias regulatory component *(RPN2) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Aev_g11022 No alias regulatory component *(RPN2) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g03867 No alias regulatory component *(RPN2) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aob_g02363 No alias regulatory component *(RPN2) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000903.41 No alias Protein degradation.26S proteasome.regulatory... 0.01 OrthoFinder output from all 47 species
Cre17.g727950 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Dcu_g07138 No alias regulatory component *(RPN2) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Ehy_g07915 No alias regulatory component *(RPN2) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01003914001 No alias Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
GSVIVT01026206001 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Gb_01242 No alias regulatory component RPN2 of 26S proteasome 0.04 OrthoFinder output from all 47 species
LOC_Os04g51910.1 LOC_Os04g51910 regulatory component RPN2 of 26S proteasome 0.03 OrthoFinder output from all 47 species
LOC_Os08g12820.1 LOC_Os08g12820 regulatory component RPN2 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Len_g16764 No alias regulatory component *(RPN2) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
MA_10430856g0020 No alias regulatory component RPN2 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Mp6g04700.1 No alias regulatory component RPN2 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Ore_g08595 No alias regulatory component *(RPN2) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Pp3c20_16700V3.1 Pp3c20_16700 26S proteasome regulatory complex, non-ATPase... 0.02 OrthoFinder output from all 47 species
Smo167705 No alias Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Solyc05g053650.3.1 Solyc05g053650 regulatory component RPN2 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Solyc09g091750.3.1 Solyc09g091750 regulatory component RPN2 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Spa_g17542 No alias regulatory component *(RPN2) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Zm00001e006994_P001 Zm00001e006994 regulatory component RPN2 of 26S proteasome 0.07 OrthoFinder output from all 47 species
Zm00001e021573_P002 Zm00001e021573 regulatory component RPN2 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e040048_P001 Zm00001e040048 regulatory component RPN2 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Zm00001e041606_P001 Zm00001e041606 regulatory component RPN2 of 26S proteasome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR040623 RPN2_C 807 975
IPR002015 Proteasome/cyclosome_rpt 463 496
IPR002015 Proteasome/cyclosome_rpt 498 530
No external refs found!