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  5. Ala_g11536

Ala_g11536 (VALRS, TWN2)


Aliases : VALRS, TWN2

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none


Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g11536
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G14610 VALRS, TWN2 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) 0.03 OrthoFinder output from all 47 species
Als_g14687 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.5 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Cre07.g350500 EMB2247 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Cre12.g537100 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Dcu_g09644 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Dde_g26392 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01010632001 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Gb_09296 VALRS, TWN2 valine-tRNA ligase 0.04 OrthoFinder output from all 47 species
LOC_Os03g48850.1 VALRS, TWN2,... valine-tRNA ligase 0.06 OrthoFinder output from all 47 species
Len_g32324 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
MA_10426363g0020 VALRS, TWN2 valine-tRNA ligase 0.08 OrthoFinder output from all 47 species
MA_583090g0010 VALRS, TWN2 Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Msp_g01242 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Ore_g19681 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Pir_g02582 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Ppi_g33649 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Smo141956 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.06 OrthoFinder output from all 47 species
Solyc09g007540.3.1 VALRS, TWN2,... valine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Spa_g12844 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Tin_g05237 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.08 OrthoFinder output from all 47 species
Zm00001e010301_P002 VALRS, TWN2,... valine-tRNA ligase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002300 aa-tRNA-synth_Ia 101 721
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 766 920
No external refs found!