Msp_g18554

Description : component *(Sec23) of Sec23/24 cargo adaptor subcomplex & original description: none

Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g18554

Target	Alias	Description	ECC score	Gene Family Method
AT3G23660	No alias	Sec23/Sec24 protein transport family protein	0.05	OrthoFinder output from all 47 species
AT4G14160	No alias	Sec23/Sec24 protein transport family protein	0.03	OrthoFinder output from all 47 species
AT5G43670	No alias	Sec23/Sec24 protein transport family protein	0.02	OrthoFinder output from all 47 species
Ala_g02545	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Als_g14171	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Aop_g18354	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.08	OrthoFinder output from all 47 species
Azfi_s0118.g046613	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Ceric.01G119200.1	Ceric.01G119200	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.06	OrthoFinder output from all 47 species
Cre03.g180850	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	OrthoFinder output from all 47 species
Dcu_g08281	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
GSVIVT01026719001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.08	OrthoFinder output from all 47 species
GSVIVT01031567001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.04	OrthoFinder output from all 47 species
Gb_05558	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species
LOC_Os09g28610.1	LOC_Os09g28610	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.02	OrthoFinder output from all 47 species
LOC_Os11g24560.1	LOC_Os11g24560	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.06	OrthoFinder output from all 47 species
Len_g09133	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Lfl_g02282	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Mp7g12190.1	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species
Pp3c10_18520V3.1	Pp3c10_18520	Sec23/Sec24 protein transport family protein	0.01	OrthoFinder output from all 47 species
Ppi_g04623	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Smo168140	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.06	OrthoFinder output from all 47 species
Solyc01g081070.3.1	Solyc01g081070	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Solyc05g053830.3.1	Solyc05g053830	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.02	OrthoFinder output from all 47 species
Spa_g17950	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Spa_g53620	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Tin_g03473	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Zm00001e008888_P001	Zm00001e008888	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.08	OrthoFinder output from all 47 species
Zm00001e009959_P002	Zm00001e009959	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species
Zm00001e021415_P001	Zm00001e021415	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006896	Sec23/24_trunk_dom	122	390
IPR012990	Sec23_24_beta_S	401	505
IPR006900	Sec23/24_helical_dom	520	618
IPR006895	Znf_Sec23_Sec24	54	92
IPR007123	Gelsolin-like_dom	634	720

External Links

No external refs found!

Msp_g18554

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation