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  5. Msp_g02820

Msp_g02820


Description : regulatory protein *(SHOU4) involved in cellulose synthase trafficking & original description: none


Gene families : OG0000929 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g02820
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT1G78880 No alias Ubiquitin-specific protease family C19-related protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene41534.t1 Aspi01Gene41534 regulatory protein *(SHOU4) involved in cellulose... 0.03 OrthoFinder output from all 47 species
LOC_Os04g51710.1 LOC_Os04g51710 SHOU4-type cellulose synthase CSC-interactive protein 0.03 OrthoFinder output from all 47 species
MA_10432016g0010 No alias SHOU4-type cellulose synthase CSC-interactive protein 0.02 OrthoFinder output from all 47 species
Ore_g09783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007013_P001 Zm00001e007013 SHOU4-type cellulose synthase CSC-interactive protein 0.02 OrthoFinder output from all 47 species
Zm00001e022289_P002 Zm00001e022289 SHOU4-type cellulose synthase CSC-interactive protein 0.03 OrthoFinder output from all 47 species
Zm00001e040067_P002 Zm00001e040067 SHOU4-type cellulose synthase CSC-interactive protein 0.04 OrthoFinder output from all 47 species
Zm00001e041596_P001 Zm00001e041596 SHOU4-type cellulose synthase CSC-interactive protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!