AT1G30290


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007479 (Gene family) Phylogenetic Tree(s): OG0007479_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G30290
Cluster HCCA cluster: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g42120 Os12g0615600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_10433153g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc08g023490.3.1 Solyc08g023490.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d041325 GRMZM2G480381 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 699 722
IPR002885 Pentatricopeptide_repeat 628 676
IPR002885 Pentatricopeptide_repeat 310 353
IPR002885 Pentatricopeptide_repeat 452 501
IPR002885 Pentatricopeptide_repeat 381 430
IPR002885 Pentatricopeptide_repeat 588 620
IPR002885 Pentatricopeptide_repeat 521 551
IPR002885 Pentatricopeptide_repeat 233 288
No external refs found!