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  5. Sacu_v1.1_s0010.g004650

Sacu_v1.1_s0010.g004650 (VALRS, TWN2)


Aliases : VALRS, TWN2

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: CDS=156-3098


Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004650
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT5G16715 EMB2247 ATP binding;valine-tRNA ligases;aminoacyl-tRNA... 0.04 OrthoFinder output from all 47 species
Cba_g18347 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Cre07.g350500 EMB2247 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
GSVIVT01030776001 EMB2247 Valine--tRNA ligase, chloroplastic/mitochondrial 2... 0.01 OrthoFinder output from all 47 species
Pir_g04280 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Pnu_g06459 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Ppi_g56587 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 700 840
IPR002300 aa-tRNA-synth_Ia 170 655
No external refs found!