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  5. Ehy_g04204

Ehy_g04204 (RBCS1A)


Aliases : RBCS1A

Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer & original description: none


Gene families : OG0000735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g04204
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
AT1G67090 RBCS1A ribulose bisphosphate carboxylase small chain 1A 0.12 OrthoFinder output from all 47 species
AT5G38410 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.09 OrthoFinder output from all 47 species
AT5G38420 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.12 OrthoFinder output from all 47 species
AT5G38430 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.13 OrthoFinder output from all 47 species
Ala_g09842 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Aob_g24117 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Aob_g33021 No alias small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Aob_g41554 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.09G050600.1 RBCS1A, Ceric.09G050600 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Ceric.09G050700.1 RBCS1A, Ceric.09G050700 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G050800.1 RBCS1A, Ceric.09G050800 small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Ceric.09G051200.1 RBCS1A, Ceric.09G051200 small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ceric.09G051400.1 RBCS1A, Ceric.09G051400 small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.09G051600.1 RBCS1A, Ceric.09G051600 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G051700.1 RBCS1A, Ceric.09G051700 small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ceric.09G051800.1 RBCS1A, Ceric.09G051800 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G051900.1 RBCS1A, Ceric.09G051900 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Cre02.g120100 RBCS1A Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Cre02.g120150 RBCS1A Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Dde_g36766 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
GSVIVT01008288001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
LOC_Os12g17600.1 RBCS1A, LOC_Os12g17600 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
LOC_Os12g19381.1 RBCS1A, LOC_Os12g19381 small subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
LOC_Os12g19470.2 RBCS1A, LOC_Os12g19470 small subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
Mp4g05980.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Mp4g06010.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g06020.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Mp4g06030.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Mp4g06050.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g09890.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Mp4g10850.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g15080.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Nbi_g16796 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
Pir_g54622 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Pir_g63695 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Pp3c4_13260V3.1 RBCS1A, Pp3c4_13260 Ribulose bisphosphate carboxylase (small chain) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g32726 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021603 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Sam_g23016 No alias small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Sam_g36381 No alias small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Smo147927 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Solyc02g063150.3.1 Solyc02g063150 small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Solyc02g085950.4.1 Solyc02g085950 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Solyc03g034220.3.1 Solyc03g034220 small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 67 174
No external refs found!