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  5. Ehy_g03669

Ehy_g03669


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g03669
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00067000 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g112695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02499 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008625 No alias not classified & original description: CDS=712-1971 0.03 OrthoFinder output from all 47 species
Dac_g03739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030120001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_29428 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_32677 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os02g12850.1 LOC_Os02g12850 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_68291g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_79622g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c4_17440V3.1 Pp3c4_17440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000411 No alias not classified & original description: CDS=1-1413 0.03 OrthoFinder output from all 47 species
Sam_g11715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g30731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011540_P001 Zm00001e011540 RNA-binding protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006189 'de novo' IMP biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 108 175
IPR000504 RRM_dom 8 70
No external refs found!