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  5. Azfi_s0006.g010039

Azfi_s0006.g010039


Description : regulatory protein *(RGG) of mRNA quality control & original description: CDS=358-1527


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0006.g010039
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT5G47210 No alias Hyaluronan / mRNA binding family 0.04 OrthoFinder output from all 47 species
Adi_g060796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18185 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Als_g58749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01753 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Aob_g20955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17505 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ceric.01G019400.1 Ceric.01G019400 regulatory protein *(RGG) of mRNA quality control &... 0.07 OrthoFinder output from all 47 species
Ceric.19G044900.1 Ceric.19G044900 regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Ceric.30G035000.1 Ceric.30G035000 regulatory protein *(RGG) of mRNA quality control &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.31 No alias No description available 0.04 OrthoFinder output from all 47 species
Cre09.g393358 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g06916 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Dde_g15710 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ehy_g11073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002125001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os01g52390.1 LOC_Os01g52390 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species
Lfl_g09581 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
MA_9567870g0010 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.05 OrthoFinder output from all 47 species
Mp4g04410.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g10018 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Msp_g15170 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Nbi_g09170 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Nbi_g22306 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g04627 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09394 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Sam_g19725 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Sam_g26127 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Spa_g31252 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Spa_g50119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05938 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Zm00001e019955_P001 Zm00001e019955 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species
Zm00001e019958_P002 Zm00001e019958 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species
Zm00001e026661_P002 Zm00001e026661 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR019084 Stm1-like_N 1 78
IPR006861 HABP4_PAIRBP1-bd 169 279
No external refs found!