1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g53360

Spa_g53360


Description : not classified & original description: none


Gene families : OG0002372 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002372_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g53360

Target Alias Description ECC score Gene Family Method Actions
Adi_g003214 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g051123 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097962 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30546 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29803 EMB2744 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33549 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68075 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g43228 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g44454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50233 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g08656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g18121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26562 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32772 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32864 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10606 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g29894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32623 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g58531 CRR21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006784 No alias not classified & original description: CDS=116-670 0.03 OrthoFinder output from all 47 species
Sam_g25185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g48804 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g19797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28102 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006189 'de novo' IMP biosynthetic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 118 164
IPR002885 Pentatricopeptide_repeat 220 267
IPR002885 Pentatricopeptide_repeat 57 83
IPR002885 Pentatricopeptide_repeat 92 114
No external refs found!