Aliases : 54CP, SRP54CP, CPSRP54, FFC
Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: none
Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Spa_g21337 | |
Cluster | HCCA: Cluster_41 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00031p00204460 | 54CP, SRP54CP,... | Protein translocation.chloroplast.thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
AT5G03940 | 54CP, SRP54CP,... | chloroplast signal recognition particle 54 kDa subunit | 0.08 | OrthoFinder output from all 47 species | |
Adi_g008664 | 54CP, SRP54CP,... | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g31519 | 54CP, SRP54CP,... | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.05 | OrthoFinder output from all 47 species | |
Aspi01Gene03016.t1 | 54CP, SRP54CP,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0352.g066605 | 54CP, SRP54CP,... | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.03G060800.1 | 54CP, SRP54CP,... | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.06 | OrthoFinder output from all 47 species | |
Cre11.g479750 | 54CP, SRP54CP,... | Protein translocation.chloroplast.thylakoid membrane SRP... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g21514 | 54CP, SRP54CP,... | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g10157 | 54CP, SRP54CP,... | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.08 | OrthoFinder output from all 47 species | |
GSVIVT01033862001 | 54CP, SRP54CP,... | Protein translocation.chloroplast.thylakoid membrane SRP... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g29558 | No alias | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g12383 | 54CP, SRP54CP,... | component *(cpSRP54) of thylakoid membrane SRP insertion... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e024147_P003 | 54CP, SRP54CP,... | component cpSRP54 of thylakoid membrane SRP insertion system | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e039381_P004 | 54CP, SRP54CP,... | component cpSRP54 of thylakoid membrane SRP insertion system | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEA | Interproscan |
MF | GO:0008312 | 7S RNA binding | IEA | Interproscan |
CC | GO:0048500 | signal recognition particle | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004177 | aminopeptidase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008235 | metalloexopeptidase activity | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
MF | GO:0016746 | acyltransferase activity | IEP | HCCA |
MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
MF | GO:0070006 | metalloaminopeptidase activity | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
No external refs found! |