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  5. Spa_g16749

Spa_g16749


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g16749

Target Alias Description ECC score Gene Family Method Actions
Adi_g040822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34416.t1 Aspi01Gene34416 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.03 OrthoFinder output from all 47 species
Ceric.25G014900.1 Ceric.25G014900 not classified & original description: pacid=50594354... 0.01 OrthoFinder output from all 47 species
Ceric.25G071400.1 Ceric.25G071400 not classified & original description: pacid=50593370... 0.04 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.05 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.04 OrthoFinder output from all 47 species
Dac_g12970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27748 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04880 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03584 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022126001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g09675 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g11399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_65548g0020 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g09237 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g05730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g26126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g01889 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g08627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 101 161
IPR000504 RRM_dom 13 79
IPR000504 RRM_dom 299 356
No external refs found!