1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g08106

Spa_g08106


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g08106
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00116200 evm_27.TU.AmTr_v1... KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G03110 No alias RNA binding;nucleic acid binding 0.02 OrthoFinder output from all 47 species
Adi_g011502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g096226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g25451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06699 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0280.g062273 No alias not classified & original description: CDS=315-2570 0.03 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12024 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G007100.1 Ceric.14G007100 not classified & original description: pacid=50632910... 0.03 OrthoFinder output from all 47 species
Dcu_g07112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g24061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019958001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
LOC_Os03g25970.1 LOC_Os03g25970 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g14000 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Ppi_g12960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc04g077060.3.1 Solyc04g077060 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc08g048500.3.1 Solyc08g048500 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07199 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36753 PEP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004486_P005 Zm00001e004486 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e012623_P002 Zm00001e012623 RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 46 99
IPR004088 KH_dom_type_1 428 491
IPR004088 KH_dom_type_1 179 247
IPR004088 KH_dom_type_1 346 396
IPR004088 KH_dom_type_1 633 695
No external refs found!