Spa_g04656 (TWN3, RPS9)

Aliases : TWN3, RPS9

Description : component *(uS9c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002624 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002624_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g04656
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AT1G74970	TWN3, RPS9	ribosomal protein S9	0.13	OrthoFinder output from all 47 species
Adi_g023332	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g09988	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aop_g12650	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0060.g034759	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.15G045500.1	TWN3, RPS9,...	component *(uS9c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Cre02.g106750	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g14878	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g06113	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Dde_g12612	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g04376	TWN3, RPS9	not classified & original description: none	0.07	OrthoFinder output from all 47 species
GSVIVT01009628001	TWN3, RPS9	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
Gb_29571	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Arabidopsis...	0.12	OrthoFinder output from all 47 species
Gb_39922	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Spinacia...	0.04	OrthoFinder output from all 47 species
LOC_Os03g55930.1	TWN3, RPS9,...	component psRPS9 of small ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Len_g10588	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Lfl_g06364	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_141286g0010	TWN3, RPS9	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
MA_18349g0020	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Spinacia...	0.1	OrthoFinder output from all 47 species
Mp3g01740.1	TWN3, RPS9	component psRPS9 of small ribosomal subunit proteome	0.16	OrthoFinder output from all 47 species
Nbi_g00484	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Pnu_g19238	TWN3, RPS9	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020559	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g15079	No alias	component *(uS9c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sam_g15080	No alias	component *(uS9c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Smo17067	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea	0.03	OrthoFinder output from all 47 species
Solyc04g079790.3.1	TWN3, RPS9,...	component psRPS9 of small ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Tin_g00437	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Zm00001e005809_P002	TWN3, RPS9,...	component psRPS9 of small ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0010206	photosystem II repair	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030091	protein repair	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072488	ammonium transmembrane transport	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	99	220

External Links

No external refs found!

Spa_g04656 (TWN3, RPS9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation