Aliases : ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1
Description : basal Sigma-type transcription factor & original description: none
Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00006p00257610 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00009p00072720 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.05 | OrthoFinder output from all 47 species | |
AMTR_s00011p00258380 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00011p00266100 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00025p00248060 | SIGD, SIG4,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00056p00209700 | SIGC, SIG3,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
AT1G08540 | ATSIG1, SIGB,... | RNApolymerase sigma subunit 2 | 0.06 | OrthoFinder output from all 47 species | |
AT1G64860 | SIGB, SIG2,... | sigma factor A | 0.03 | OrthoFinder output from all 47 species | |
AT2G36990 | SIGF, SIG6,... | RNApolymerase sigma-subunit F | 0.09 | OrthoFinder output from all 47 species | |
AT5G13730 | SIGD, SIG4 | sigma factor 4 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g013131 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Adi_g078223 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g088986 | ATSIG1, SIGB,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Aev_g01395 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g07913 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ala_g02431 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g12116 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g19265 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Als_g20576 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Als_g27390 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g61402 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Aob_g09016 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Aob_g09018 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g16433 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g19589 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene43774.t1 | ATSIG1, SIGB,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0001.g000670 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0003.g007447 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0012.g013021 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g03997 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g05885 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g10475 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.02G009200.1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.02G083900.1 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.15G078000.1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cre03.g194950 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g03371 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g10853 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g31006 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g05693 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.09 | OrthoFinder output from all 47 species | |
Dcu_g09876 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g23470 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g24733 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g06928 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Ehy_g07794 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g12113 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g20636 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01019326001 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01024261001 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01025717001 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01032193001 | SIGD, SIG4 | RNA biosynthesis.organelle... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01035330001 | SIGC, SIG3 | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
Gb_05480 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Gb_23845 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g16430.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os08g06630.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os08g14450.1 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os11g26160.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.06 | OrthoFinder output from all 47 species | |
MA_10429585g0010 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Mp4g13380.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
Mp7g15030.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
Msp_g08661 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g08662 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g13789 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g21262 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g00589 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g12897 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g07253 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g06448 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g07492 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g11443 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g30557 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0198.g025553 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g19255 | No alias | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g24688 | No alias | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g38609 | No alias | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Smo117159 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.06 | OrthoFinder output from all 47 species | |
Solyc01g081490.3.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g097320.3.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g072710.3.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
Solyc08g065970.3.1 | SIGC, SIG3,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Solyc09g008040.3.1 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Spa_g13112 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g12918 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e001198_P005 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e011616_P008 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e021420_P001 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e021683_P001 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e032586_P001 | SIGC, SIG3,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
BP | GO:0006352 | DNA-templated transcription initiation | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006457 | protein folding | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0051287 | NAD binding | IEP | HCCA |
MF | GO:0070569 | uridylyltransferase activity | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |