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GO:0003700: DNA-binding transcription factor activity (Molecular function)

"A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons." [GOC:txnOH-2018]


There are 42735 sequences with this label.

Enriched clusters
Name Species % in cluster p-value corrected p-value action
Cluster_99 Abrodictyum obscurum 5.0 % 0.000979 0.008974
Cluster_124 Abrodictyum obscurum 2.96 % 0.002406 0.04223
Cluster_34 Abrodictyum obscurum 3.89 % 6.3e-05 0.009066
Cluster_95 Abrodictyum obscurum 3.5 % 0.001156 0.009481
Cluster_159 Actinostachys digitata 4.72 % 4.6e-05 0.003617
Cluster_49 Actinostachys digitata 4.97 % 0.0 1.2e-05
Cluster_306 Actinostachys digitata 5.36 % 0.002792 0.018369
Cluster_227 Actinostachys digitata 3.55 % 0.000221 0.001175
Cluster_82 Angiopteris evecta 4.58 % 1e-06 0.0002
Cluster_104 Angiopteris evecta 9.03 % 0.0 0.0
Cluster_3 Angiopteris evecta 2.42 % 0.002584 0.011474
Cluster_8 Azolla filiculoides 5.26 % 0.002571 0.043998
Cluster_38 Azolla filiculoides 9.3 % 0.0029 0.025653
Cluster_109 Azolla filiculoides 6.19 % 0.00231 0.035361
Cluster_110 Azolla filiculoides 11.36 % 0.000343 0.024492
Cluster_89 Adiantum latifolium 2.29 % 0.007145 0.035319
Cluster_46 Adiantum latifolium 3.79 % 0.000281 0.012922
Cluster_32 Adiantum latifolium 3.93 % 1.3e-05 0.000175
Cluster_212 Alsophila latebrosa 9.76 % 0.000201 0.018072
Cluster_149 Alsophila latebrosa 8.24 % 3e-06 0.000467
Cluster_140 Alsophila latebrosa 3.77 % 0.000978 0.006763
Cluster_11 Alsophila latebrosa 2.76 % 0.009494 0.034956
Cluster_45 Alsophila latebrosa 6.12 % 0.005043 0.030554
Cluster_156 Alsophila latebrosa 8.2 % 7.3e-05 0.004907
Cluster_432 Alsophila latebrosa 33.33 % 0.021001 0.049353
Cluster_204 Alsophila latebrosa 9.52 % 0.000221 0.022071
Cluster_146 Alsophila latebrosa 4.32 % 0.000484 0.036495
Cluster_105 Alsophila latebrosa 3.98 % 0.000274 0.002268
Cluster_53 Alsophila latebrosa 4.71 % 3.1e-05 0.000235
Cluster_150 Alsophila latebrosa 3.31 % 0.001894 0.013942
Cluster_136 Alsophila latebrosa 5.95 % 0.000333 0.037778
Cluster_93 Alsophila latebrosa 4.14 % 0.000605 0.009081
Cluster_155 Amblovenatum opulentum 3.76 % 0.00078 0.032966
Cluster_171 Amblovenatum opulentum 3.03 % 0.005671 0.015487
Cluster_102 Amblovenatum opulentum 3.05 % 0.000715 0.007451
Cluster_289 Amblovenatum opulentum 3.49 % 0.011171 0.043738
Cluster_6 Alsophila spinulosa 5.26 % 3.1e-05 0.002954
Cluster_68 Alsophila spinulosa 5.83 % 0.000384 0.004067
Cluster_149 Alsophila spinulosa 6.56 % 0.002385 0.006464
Cluster_24 Alsophila spinulosa 6.02 % 4e-06 2.9e-05
Cluster_15 Alsophila spinulosa 3.33 % 0.012561 0.048796
Cluster_83 Alsophila spinulosa 4.71 % 0.000186 0.003368
Cluster_43 Alsophila spinulosa 7.76 % 1e-06 0.000185
Cluster_57 Alsophila spinulosa 7.32 % 2e-06 0.000304
Cluster_10 Amborella trichopoda 3.91 % 0.006563 0.031575
Cluster_110 Amborella trichopoda 5.56 % 0.013334 0.040805
Cluster_49 Amborella trichopoda 3.95 % 0.00127 0.009437
Cluster_51 Cibotium barometz 9.8 % 2e-06 0.000304
Cluster_5 Cibotium barometz 5.97 % 0.000179 0.002685
Cluster_74 Chlamydomonas reinhardtii 4.65 % 0.004646 0.036781
Cluster_44 Chlamydomonas reinhardtii 2.94 % 0.011291 0.021714
Cluster_57 Chlamydomonas reinhardtii 4.44 % 0.005078 0.018348
Cluster_93 Chlamydomonas reinhardtii 16.67 % 0.014123 0.042956
Cluster_78 Ceratopteris richardii 6.0 % 0.000137 0.000827
Cluster_79 Ceratopteris richardii 5.49 % 0.000745 0.004112
Cluster_52 Diplazium proliferum (Lam.) Kaulf. 5.26 % 3e-06 0.000374
Cluster_160 Dicranopteris curranii 10.0 % 5e-06 0.000423
Cluster_27 Dicranopteris curranii 3.19 % 0.011761 0.048444
Cluster_153 Dicranopteris curranii 6.38 % 0.001688 0.005909
Cluster_55 Dicranopteris curranii 5.41 % 1e-06 2.8e-05
Cluster_169 Dicranopteris curranii 10.2 % 5e-06 0.000397
Cluster_23 Dicranopteris curranii 5.22 % 2.6e-05 0.000187
Cluster_175 Davallia denticulata 9.52 % 1e-06 0.000161
Cluster_178 Davallia denticulata 3.49 % 0.010405 0.049424
Cluster_91 Davallia denticulata 6.94 % 3.9e-05 0.001895
Cluster_130 Davallia denticulata 3.91 % 0.00058 0.012183
Cluster_141 Davallia denticulata 5.63 % 0.000532 0.009038
Cluster_161 Davallia denticulata 9.76 % 6.3e-05 0.004134
Cluster_21 Equisetum hyemale 7.79 % 0.0 0.0
Cluster_2 Equisetum hyemale 4.84 % 8e-06 0.000688
Cluster_160 Ginkgo biloba 7.32 % 0.002324 0.010508
Cluster_137 Ginkgo biloba 5.5 % 7.7e-05 0.000245
Cluster_376 Ginkgo biloba 33.33 % 0.019123 0.03005
Cluster_14 Ginkgo biloba 12.84 % 0.0 0.0
Cluster_108 Ginkgo biloba 9.21 % 1e-06 9.7e-05
Cluster_101 Ginkgo biloba 9.46 % 0.0 0.0
Cluster_38 Ginkgo biloba 12.4 % 0.0 0.0
Cluster_103 Ginkgo biloba 4.82 % 0.002045 0.0149
Cluster_55 Lindsaea ensifolia 3.19 % 0.000983 0.013308
Cluster_68 Lindsaea ensifolia 6.0 % 0.00335 0.019206
Cluster_140 Lindsaea ensifolia 9.52 % 0.000116 0.012222
Cluster_181 Lindsaea ensifolia 3.03 % 0.001282 0.01463
Cluster_183 Lindsaea ensifolia 5.66 % 0.003951 0.024499
Cluster_80 Lygodium flexuosum 5.06 % 1e-06 0.000127
Cluster_140 Microlepia speluncae 5.43 % 2.5e-05 0.00257
Cluster_10 Microlepia speluncae 3.5 % 0.000206 0.03753
Cluster_47 Microlepia speluncae 3.12 % 0.001377 0.012691
Cluster_31 Marchantia polymorpha 6.93 % 0.0 1.7e-05
Cluster_147 Nephrolepis biserrata 6.0 % 0.001242 0.02857
Cluster_2 Nephrolepis biserrata 10.2 % 2e-06 0.00016
Cluster_56 Nephrolepis biserrata 4.11 % 0.003673 0.024134
Cluster_62 Ophioglossum reticulatum 8.21 % 0.0 0.0
Cluster_43 Ophioglossum reticulatum 2.69 % 0.002922 0.029218
Cluster_456 Oryza sativa 80.0 % 0.0 1e-06
Cluster_455 Oryza sativa 100.0 % 0.000108 0.001452
Cluster_78 Oryza sativa 12.2 % 6.5e-05 0.000372
Cluster_82 Oryza sativa 4.23 % 0.003787 0.014158
Cluster_11 Oryza sativa 8.42 % 7e-06 0.000211
Cluster_48 Oryza sativa 5.17 % 0.001374 0.007696
Cluster_95 Oryza sativa 7.22 % 7.1e-05 0.000463
Cluster_73 Oryza sativa 6.74 % 0.00034 0.007992
Cluster_112 Oryza sativa 5.98 % 0.000231 0.001985
Cluster_117 Oryza sativa 4.65 % 0.012476 0.040545
Cluster_46 Oryza sativa 7.52 % 1e-06 1.2e-05
Cluster_115 Picea abies 10.61 % 0.0 2e-05
Cluster_897 Picea abies 100.0 % 4.1e-05 0.00018
Cluster_250 Picea abies 6.67 % 2.7e-05 0.001028
Cluster_137 Picea abies 4.71 % 0.002256 0.020649
Cluster_242 Picea abies 4.82 % 0.002068 0.010426
Cluster_165 Picea abies 12.64 % 0.0 0.0
Cluster_200 Picea abies 5.77 % 0.004606 0.043505
Cluster_36 Picea abies 5.66 % 0.00486 0.024502
Cluster_461 Picea abies 28.57 % 0.000846 0.011423
Cluster_185 Picea abies 7.69 % 0.000356 0.006767
Cluster_375 Picea abies 33.33 % 0.019147 0.026109
Cluster_136 Picea abies 5.08 % 0.006556 0.033014
Cluster_55 Pleocnemia irregularis 8.82 % 0.0 1e-06
Cluster_47 Psilotum nudum 2.92 % 0.001462 0.012867
Cluster_39 Psilotum nudum 3.83 % 3.1e-05 0.003093
Cluster_149 Physcomitrella patens 50.0 % 0.001909 0.022911
Cluster_87 Physcomitrella patens 2.52 % 0.0002 0.009217
Cluster_256 Pyrrosia piloselloides 3.57 % 0.003369 0.032096
Cluster_245 Pyrrosia piloselloides 7.41 % 4.2e-05 0.001657
Cluster_225 Pyrrosia piloselloides 7.02 % 5.2e-05 0.005144
Cluster_223 Pyrrosia piloselloides 6.56 % 6.8e-05 0.000738
Cluster_73 Pyrrosia piloselloides 4.26 % 1.2e-05 0.000179
Cluster_122 Salvinia molesta 5.45 % 0.000798 0.028114
Cluster_107 Salvinia molesta 3.43 % 2.6e-05 0.000393
Cluster_67 Solanum lycopersicum 4.62 % 0.004177 0.017674
Cluster_100 Solanum lycopersicum 5.0 % 0.006254 0.040323
Cluster_54 Solanum lycopersicum 11.36 % 0.000153 0.016963
Cluster_18 Solanum lycopersicum 6.98 % 0.013543 0.041065
Cluster_45 Solanum lycopersicum 5.65 % 0.000628 0.004748
Cluster_171 Solanum lycopersicum 100.0 % 0.000134 0.002815
Cluster_55 Solanum lycopersicum 5.0 % 0.001281 0.005486
Cluster_38 Solanum lycopersicum 10.0 % 0.0 0.0
Cluster_66 Selaginella moellendorffii 3.28 % 7e-06 0.000102
Cluster_21 Stenochlaena palustris 11.11 % 0.0 0.0
Cluster_78 Stenochlaena palustris 5.13 % 1e-06 0.000192
Cluster_64 Stenochlaena palustris 4.65 % 3e-06 0.000649
Cluster_393 Stenochlaena palustris 100.0 % 2.6e-05 0.000345
Cluster_126 Tectaria incisa 4.42 % 0.000204 0.019617
Cluster_14 Tectaria incisa 2.94 % 0.012527 0.043362
Cluster_96 Vitis vinifera 11.59 % 0.0 1.5e-05
Cluster_28 Vitis vinifera 6.78 % 2.4e-05 0.00069
Cluster_14 Vitis vinifera 4.76 % 0.000693 0.003271
Cluster_87 Vitis vinifera 6.8 % 7.8e-05 0.000691
Cluster_102 Vitis vinifera 10.87 % 9.2e-05 0.006254
Cluster_47 Vitis vinifera 6.25 % 0.012096 0.034919
Cluster_16 Vitis vinifera 15.0 % 0.0 0.0
Cluster_153 Zea mays 18.75 % 0.0 0.0
Cluster_112 Zea mays 12.7 % 0.0 0.0
Cluster_78 Zea mays 12.0 % 2.9e-05 9.1e-05
Cluster_12 Zea mays 6.67 % 4e-05 0.00056
Cluster_177 Zea mays 8.7 % 0.002246 0.018579
Cluster_103 Zea mays 5.88 % 0.00912 0.023587
Cluster_156 Zea mays 10.1 % 0.0 3.3e-05
Cluster_3 Zea mays 6.45 % 0.000133 0.007399
Cluster_51 Zea mays 5.77 % 0.001634 0.010436
Cluster_158 Zea mays 9.62 % 0.000399 0.021927
Cluster_50 Zea mays 7.63 % 1.4e-05 9.9e-05
Cluster_735 Zea mays 100.0 % 0.000144 0.003019
Cluster_16 Zea mays 9.6 % 0.0 0.0
Cluster_51 Arabidopsis thaliana 14.47 % 0.005771 0.02939
Cluster_59 Arabidopsis thaliana 16.28 % 0.000612 0.022083
Cluster_19 Arabidopsis thaliana 15.25 % 0.008531 0.031664
Cluster_104 Arabidopsis thaliana 21.43 % 0.000759 0.010158
Cluster_64 Arabidopsis thaliana 18.42 % 0.000163 0.0054
Cluster_40 Arabidopsis thaliana 16.9 % 0.001045 0.048448
Cluster_20 Arabidopsis thaliana 13.51 % 0.000607 0.005852
Cluster_78 Arabidopsis thaliana 19.15 % 0.001767 0.01633
Cluster_139 Arabidopsis thaliana 16.67 % 0.007551 0.049837
Cluster_47 Arabidopsis thaliana 14.47 % 0.005771 0.021188
Cluster_92 Arabidopsis thaliana 24.56 % 5e-06 0.001081
Cluster_123 Arabidopsis thaliana 25.71 % 0.0 7e-06
Sequences (42735) (download table)

Info: GO-associations disabled for items with more than 300 associated sequences !
InterPro and Family associations disabled for items with more than 5000 associated sequences !