Ppi_g15929 (RPL4)

Aliases : RPL4

Description : component *(uL4c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g15929
Cluster	HCCA: Cluster_213

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00221060	RPL4,...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT1G07320	RPL4	ribosomal protein L4	0.08	OrthoFinder output from all 47 species
Ala_g05983	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g20889	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g13415	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g05120	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0056.g034220	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.09G057300.1	RPL4, Ceric.09G057300	component *(uL4c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cre11.g479500	RPL4	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Dac_g21787	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g06106	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dde_g06392	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g02216	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01024788001	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum	0.06	OrthoFinder output from all 47 species
Gb_03469	RPL4	component psRPL4 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os03g15870.1	RPL4, LOC_Os03g15870	component psRPL4 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Len_g13257	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g01030	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
MA_2315568g0010	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Mp1g18940.1	RPL4	component psRPL4 of large ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
Msp_g19825	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g14226	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g08496	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pnu_g10727	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0219.g026142	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Solyc07g061900.3.1	RPL4, Solyc07g061900	component psRPL4 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Spa_g08728	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Tin_g24110	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Zm00001e001165_P001	RPL4, Zm00001e001165	component psRPL4 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	94	282

External Links

No external refs found!

Ppi_g15929 (RPL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation