1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00046p00219150

AMTR_s00046p00219150 (STM, SHM1, SHMT1,...)


Aliases : STM, SHM1, SHMT1, evm_27.TU.AmTr_v1.0_scaffold00046.151

Description : Photosynthesis.photorespiration.serine hydroxymethyltransferase


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00219150

Target Alias Description ECC score Gene Family Method Actions
AT4G37930 STM, SHM1, SHMT1 serine transhydroxymethyltransferase 1 0.17 OrthoFinder output from all 47 species
Adi_g081286 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Aev_g09895 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Ala_g06688 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Als_g06300 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Aob_g16059 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Aop_g11376 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.14 OrthoFinder output from all 47 species
Aspi01Gene56437.t1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.12 OrthoFinder output from all 47 species
Azfi_s0018.g014711 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Azfi_s0102.g044437 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Cba_g12674 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
Ceric.28G027700.1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.31 SHM4 Enzyme classification.EC_2 transferases.EC_2.1... 0.02 OrthoFinder output from all 47 species
Dac_g28484 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Dcu_g14554 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Dcu_g21464 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Dde_g20927 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Ehy_g16256 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.08 OrthoFinder output from all 47 species
GSVIVT01003859001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.08 OrthoFinder output from all 47 species
LOC_Os01g65410.1 SHM7, LOC_Os01g65410 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species
LOC_Os03g52840.1 STM, SHM1,... serine hydroxymethyltransferase 0.08 OrthoFinder output from all 47 species
Len_g12401 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.12 OrthoFinder output from all 47 species
Lfl_g04055 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
MA_99276g0010 STM, SHM1, SHMT1 serine hydroxymethyltransferase 0.08 OrthoFinder output from all 47 species
Mp2g08370.1 STM, SHM1, SHMT1 serine hydroxymethyltransferase 0.1 OrthoFinder output from all 47 species
Msp_g48544 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.14 OrthoFinder output from all 47 species
Nbi_g03063 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.12 OrthoFinder output from all 47 species
Ore_g09056 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Pir_g00993 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
Pnu_g10887 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Pp3c1_27990V3.1 STM, SHM1,... serine transhydroxymethyltransferase 1 0.02 OrthoFinder output from all 47 species
Ppi_g14402 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Sam_g36946 No alias EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Smo270566 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.07 OrthoFinder output from all 47 species
Solyc02g091560.3.1 STM, SHM1,... serine hydroxymethyltransferase 0.17 OrthoFinder output from all 47 species
Spa_g16771 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Tin_g10060 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.15 OrthoFinder output from all 47 species
Zm00001e005607_P001 STM, SHM1,... serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004372 glycine hydroxymethyltransferase activity IEA Interproscan
BP GO:0006544 glycine metabolic process IEA Interproscan
BP GO:0006563 L-serine metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001085 Ser_HO-MeTrfase 55 452
No external refs found!