Sequence Description Alias PCC hrr AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase FNR1, ATLFNR1, evm_27.TU.AmTr_v1.0_scaffold00016.69 0.9281066722870875 34 AMTR_s00106p00039260 Carbohydrate metabolism.mannose metabolism.phosphomannomutase evm_27.TU.AmTr_v1.0_scaffold00106.20 0.9272753791901643 3 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component NDH48, NDF1, evm_27.TU.AmTr_v1.0_scaffold00065.208 0.9254845024440116 11 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPA-1, GAPA, evm_27.TU.AmTr_v1.0_scaffold00016.302 0.9202840893150132 25 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase PRK, evm_27.TU.AmTr_v1.0_scaffold00048.87 0.9180443465008868 12 AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein TLP18.3, evm_27.TU.AmTr_v1.0_scaffold00025.118 0.9139057709987305 47 AMTR_s00037p00168570 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit gamma ATPC1, evm_27.TU.AmTr_v1.0_scaffold00037.79 0.9118935584198874 13 AMTR_s00017p00154940 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).PsbS-dependent machinery.PsbS protein NPQ4, PSBS, evm_27.TU.AmTr_v1.0_scaffold00017.71 0.9102461735993022 8 AMTR_s00017p00136990 Cellular respiration.glycolysis.plastidial glycolysis.fructose-1,6-bisphosphate aldolase FBA2, evm_27.TU.AmTr_v1.0_scaffold00017.60 0.9089303148264878 16 AMTR_s00029p00134700 PSBQ-2, PSII-Q, PSBQ, evm_27.TU.AmTr_v1.0_scaffold00029.153 0.9086160878178917 10 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component CRR23, evm_27.TU.AmTr_v1.0_scaffold00010.88 0.9074003770716597 28 AMTR_s00098p00154060 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL3/PQL2 component PQL1, PQL2, evm_27.TU.AmTr_v1.0_scaffold00098.43 0.9060539500165921 36 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase HPR, ATHPR1, evm_27.TU.AmTr_v1.0_scaffold00152.29 0.9009225775101899 55 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase ATGSR1, GLN1;1, ATGLN1;1, GSR 1, evm_27.TU.AmTr_v1.0_scaffold00060.55 0.899834450153874 34 AMTR_s00079p00061090 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit evm_27.TU.AmTr_v1.0_scaffold00079.19 0.8997069797347091 49 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase PGK1, evm_27.TU.AmTr_v1.0_scaffold00062.192 0.8992325598689959 57 AMTR_s00058p00182650 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00058.174 0.8992229915022806 31 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component PGR5-LIKE A, evm_27.TU.AmTr_v1.0_scaffold00001.191 0.898052076390064 51 AMTR_s00064p00096040 Photosynthesis.photorespiration.glycine cleavage system.P-protein glycine dehydrogenase component AtGLDP1, GLDP1, evm_27.TU.AmTr_v1.0_scaffold00064.36 0.8975718032048644 19 AMTR_s00010p00216200 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase SBPASE, evm_27.TU.AmTr_v1.0_scaffold00010.221 0.8970381183297111 44 AMTR_s00033p00240030 L-type lectin-domain containing receptor kinase IX.2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.255 0.896479447301909 21 AMTR_s00076p00039590 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase ABA1, IBS3, ATABA1, ZEP, NPQ2, LOS6, ATZEP, evm_27.TU.AmTr_v1.0_scaffold00076.7 0.8958662679523576 28 AMTR_s00099p00157080 Nutrient uptake.copper uptake.reduction-based uptake.FRO metal ion-chelate reductase ATFRO6, FRO6, evm_27.TU.AmTr_v1.0_scaffold00099.153 0.8947811888665084 23 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC, evm_27.TU.AmTr_v1.0_scaffold00072.37 0.8938155217319949 91 AMTR_s00010p00265990 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL2/PQL1 component PQL1, PQL2, evm_27.TU.AmTr_v1.0_scaffold00010.518 0.8926419377622974 41 AMTR_s00025p00156240 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor CIA2, evm_27.TU.AmTr_v1.0_scaffold00025.176 0.892559892898349 26 AMTR_s00032p00222720 Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00032.231 0.891546823246951 27 AMTR_s00063p00191490 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase GLU1, FD-GOGAT, GLS1, GLUS, evm_27.TU.AmTr_v1.0_scaffold00063.73 0.8898648682092699 28 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.8884459540415703 47 AMTR_s00092p00018230 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.4 0.8863408119501902 68 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component CcdA, evm_27.TU.AmTr_v1.0_scaffold00061.187 0.8862768134608264 56 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.885718932484762 88 AMTR_s00096p00053280 evm_27.TU.AmTr_v1.0_scaffold00096.21 0.8844014356066686 34 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor GUN4, evm_27.TU.AmTr_v1.0_scaffold00049.26 0.8843195136348909 48 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD PSAD-1, evm_27.TU.AmTr_v1.0_scaffold00103.18 0.8828801590433049 59 AMTR_s00071p00016000 Redox homeostasis.chloroplast redox homeostasis.M-type thioredoxin ATHM2, evm_27.TU.AmTr_v1.0_scaffold00071.5 0.8820550799149668 69 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase RLK, evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8819320314128725 38 AMTR_s00012p00254790 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.281 0.8815300635818956 39 AMTR_s00077p00172700 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhN component evm_27.TU.AmTr_v1.0_scaffold00077.191 0.8801832842448893 54 AMTR_s00012p00255610 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.291 0.8799646408159428 41 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8777959503493354 96 AMTR_s00011p00245550 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.144 0.8770449363423386 43 AMTR_s00025p00041760 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase APL1, ADG2, evm_27.TU.AmTr_v1.0_scaffold00025.20 0.8769809521377757 73 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.8752439872563204 67 AMTR_s00064p00107710 RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor GATA22, CGA1, GNL, evm_27.TU.AmTr_v1.0_scaffold00064.40 0.8726338105474295 47 AMTR_s00068p00047550 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).FLAP1 NPQ-regulator protein evm_27.TU.AmTr_v1.0_scaffold00068.17 0.8726127499856473 48 AMTR_s00059p00176390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2, evm_27.TU.AmTr_v1.0_scaffold00059.181 0.8725903085816351 97 AMTR_s00018p00255680 Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.171 0.8725896791057559 50 AMTR_s00093p00107560 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR3 evm_27.TU.AmTr_v1.0_scaffold00093.37 0.8725323603431926 75 AMTR_s00012p00254100 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.273 0.8711312474255954 74 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor HCF164, evm_27.TU.AmTr_v1.0_scaffold00059.198 0.8709481551476839 78 AMTR_s00099p00139960 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb5-type component LHCB5, evm_27.TU.AmTr_v1.0_scaffold00099.124 0.8701504750148533 79 AMTR_s00149p00098530 evm_27.TU.AmTr_v1.0_scaffold00149.83 0.8690314843424862 70 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A, evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8679478117623477 95 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG PSAG, evm_27.TU.AmTr_v1.0_scaffold00061.40 0.8675771273041627 77 AMTR_s00048p00229560 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00048.224 0.8674569689108662 60 AMTR_s00092p00098850 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.56 0.8654630804746071 61 AMTR_s00049p00157390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY YCF32, PSBY, evm_27.TU.AmTr_v1.0_scaffold00049.142 0.865343230582716 98 AMTR_s00058p00191040 Carbonic anhydrase, chloroplastic OS=Spinacia oleracea CA18, CA2, BETA CA2, evm_27.TU.AmTr_v1.0_scaffold00058.190 0.8645939198047291 64 AMTR_s00099p00163300 RNA biosynthesis.transcriptional activation.NAC transcription factor ANAC034, LOV1, ANAC035, NAC035, evm_27.TU.AmTr_v1.0_scaffold00099.164 0.8631869786263735 97 AMTR_s00088p00153020 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component LHCB2.3, LHCB2, LHCB2.4, evm_27.TU.AmTr_v1.0_scaffold00088.122 0.8631136975950333 84 AMTR_s00065p00176540 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase ALDH11A3, evm_27.TU.AmTr_v1.0_scaffold00065.146 0.8589800604268595 75 AMTR_s00041p00199430 evm_27.TU.AmTr_v1.0_scaffold00041.178 0.8567659833160217 78 AMTR_s00010p00264770 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa4-type component CAB4, LHCA4, evm_27.TU.AmTr_v1.0_scaffold00010.505 0.8533249601086044 86 AMTR_s00081p00063880 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase PID2, evm_27.TU.AmTr_v1.0_scaffold00081.20 0.8529036263913681 74 AMTR_s00009p00232920 evm_27.TU.AmTr_v1.0_scaffold00009.186 0.8519968785532259 76 AMTR_s00078p00063510 Photosynthesis.calvin cycle.phosphopentose epimerase RPE, EMB2728, evm_27.TU.AmTr_v1.0_scaffold00078.34 0.8504616074217466 82 AMTR_s00046p00093500 Photosynthesis.photophosphorylation.ATP synthase complex.membrane CF0 subcomplex.subunit b_ evm_27.TU.AmTr_v1.0_scaffold00046.51 0.849882681508759 81 AMTR_s00056p00026260 evm_27.TU.AmTr_v1.0_scaffold00056.12 0.848960704855939 83 AMTR_s00033p00204130 Carbohydrate metabolism.sucrose metabolism.synthesis.sucrose-phosphate synthase SPS1F, ATSPS1F, evm_27.TU.AmTr_v1.0_scaffold00033.176 0.8458172943531623 84 AMTR_s00109p00047950 Solute transport.carrier-mediated transport.TOC superfamily.TSUP transport protein evm_27.TU.AmTr_v1.0_scaffold00109.34 0.845697290381622 85 AMTR_s00153p00069260 Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00153.36 0.8439773211596202 87 AMTR_s00095p00031150 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.12 0.8424290327527846 90 AMTR_s00067p00081240 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OTP84, evm_27.TU.AmTr_v1.0_scaffold00067.57 0.8409784110823029 93 AMTR_s00013p00262850 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP72A15, evm_27.TU.AmTr_v1.0_scaffold00013.282 0.8396111768632812 96 AMTR_s00089p00073940 evm_27.TU.AmTr_v1.0_scaffold00089.34 0.8388127279026957 98 AMTR_s00056p00198260 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00056.182 0.8382163998681591 99